DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and Prrx2

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001402085.1 Gene:Prrx2 / 113931 RGDID:1311471 Length:248 Species:Rattus norvegicus


Alignment Length:234 Identity:77/234 - (32%)
Similarity:100/234 - (42%) Gaps:69/234 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ISEEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGGAPSGASGASGGTNSPV 67
            :|..:.|||:....:.|       ....||..|..             ||....||.|.|:.:..
  Rat    35 VSHLLDLEEVAAAGRRA-------AGPVPGPEARE-------------GAAREPSGGSSGSEAAP 79

  Fly    68 SDGNSDCEADEYAP----KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEAR 128
            .||  ||.:..:..    |:||||.||||.|.||:.||:.|.||||||.|.|||||.::.|:|||
  Rat    80 QDG--DCPSPGHGSATKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEAR 142

  Fly   129 IQVWFQNRRAKWRKQEKV------------------------------------GPQSHPYN--- 154
            :||||||||||:|:.|:.                                    .|.|.||:   
  Rat   143 VQVWFQNRRAKFRRNERAMLATRSASLLKSYGQEAAIEQPVAPRPTTLSPDYLSWPASSPYSSVP 207

  Fly   155 PYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHA 193
            ||.|||::.....|..|   |....|..: .|.|...|:
  Rat   208 PYSPGGSSPATPGVNMA---NSIASLRLK-AKEFSLHHS 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 38/55 (69%)
OAR 374..391 CDD:461067
Prrx2NP_001402085.1 Homeodomain 104..156 CDD:459649 35/51 (69%)
COG5576 <110..214 CDD:227863 41/103 (40%)
OAR 222..238 CDD:461067 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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