DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and prrx2

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:XP_002940803.1 Gene:prrx2 / 100488907 XenbaseID:XB-GENE-947362 Length:248 Species:Xenopus tropicalis


Alignment Length:212 Identity:73/212 - (34%)
Similarity:109/212 - (51%) Gaps:40/212 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGISEEIKLEELP--QEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSGGAPS------GAS 57
            :|:.:.|.|.|:.  :..:|.|......|........|:||...|..|:    ||:      .||
 Frog     5 LGLDKSIALNEMRILEPTELPHGRKNFSVSHLLDLEEAAAGMQTTADMA----APTEDEDKEPAS 65

  Fly    58 GASGGTNSPVSDGNS-DCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMK 121
            |.|..:...:.:|.| :..:::.:.|:||||.||||.|.||:.||:.|.||||||.|.||:||.:
 Frog    66 GGSSDSEVTIHEGGSPNPSSNKSSGKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARR 130

  Fly   122 IGLTEARIQVWFQNRRAKWRKQEK-----------------------VGPQSHPYNP-YLPGGAA 162
            :.|:|||:||||||||||:|:.|:                       |.|::....| |:|..:.
 Frog   131 VSLSEARVQVWFQNRRAKFRRNERAMLASRSATHLKSYSQDTGAEQQVSPRASTLTPEYMPWNSN 195

  Fly   163 TMQTVVGAALPP-NPFT 178
            :..:  .|:||| :|.|
 Frog   196 SNYS--NASLPPYSPTT 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 37/55 (67%)
OAR 374..391 CDD:461067
prrx2XP_002940803.1 Homeodomain 95..151 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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