DRSC/TRiP Functional Genomics Resources

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Protein Alignment al and alx4a

DIOPT Version :10

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:XP_001340966.1 Gene:alx4a / 100006399 ZFINID:ZDB-GENE-070712-3 Length:368 Species:Danio rerio


Alignment Length:409 Identity:109/409 - (26%)
Similarity:143/409 - (34%) Gaps:183/409 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PDAVVLVDRAPGSSAA--------SAGAALTVSMSVSGGAPSGASGA-----SGGTNSP---VSD 69
            ||:..|.....|.:..        |.|  ||.|.......|:|..|:     ..|..||   .|:
Zfish    96 PDSSKLQQENSGHNGGLIACYGKDSTG--LTDSELPQNSDPAGMDGSYLSVKDSGVKSPQQATSE 158

  Fly    70 GNSDCEADE-YAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWF 133
            ..|..:..| .:.|.|:||.||||||:|||||||.|.:||||||:.||:||::..|||||:||||
Zfish   159 LASPLDKTEGESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWF 223

  Fly   134 QNRRAKWRKQEKVG--------------------PQSHP--YNPYLPGGAATMQTVVGAALPPNP 176
            |||||||||:|:.|                    |:::.  .||...||::....|.|..:|.:.
Zfish   224 QNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRPENYAQIQNPSWIGGSSAASPVPGCVVPCDS 288

  Fly   177 FTHLGFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQ 241
            .|..                                        .|||  ||..:|:    |.| 
Zfish   289 VTSC----------------------------------------MPPH--PHAASGV----SDF- 306

  Fly   242 SLLANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTAHPPPPQAPP 306
                          ||.|      ||..|.....:.|...||..|                    
Zfish   307 --------------LGVP------SPGSHMGQTHMGSLFGSPGMG-------------------- 331

  Fly   307 QMPVGVQPAQLSPQHLVGIALTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATP 371
               .|:....|               ::.|                                   
Zfish   332 ---TGINGYDL---------------NMDP----------------------------------- 343

  Fly   372 PEDRRTSSIAALRLKAREH 390
              ||::|||||||:||:||
Zfish   344 --DRKSSSIAALRMKAKEH 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeodomain 86..142 CDD:459649 42/55 (76%)
OAR 374..391 CDD:461067 13/17 (76%)
alx4aXP_001340966.1 Homeodomain 176..232 CDD:459649 42/55 (76%)
OAR 344..362 CDD:461067 13/17 (76%)

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