DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment al and alx4a

DIOPT Version :9

Sequence 1:NP_722629.1 Gene:al / 33208 FlyBaseID:FBgn0000061 Length:408 Species:Drosophila melanogaster
Sequence 2:XP_001340966.1 Gene:alx4a / 100006399 ZFINID:ZDB-GENE-070712-3 Length:368 Species:Danio rerio


Alignment Length:409 Identity:109/409 - (26%)
Similarity:143/409 - (34%) Gaps:183/409 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PDAVVLVDRAPGSSAA--------SAGAALTVSMSVSGGAPSGASGA-----SGGTNSP---VSD 69
            ||:..|.....|.:..        |.|  ||.|.......|:|..|:     ..|..||   .|:
Zfish    96 PDSSKLQQENSGHNGGLIACYGKDSTG--LTDSELPQNSDPAGMDGSYLSVKDSGVKSPQQATSE 158

  Fly    70 GNSDCEADE-YAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWF 133
            ..|..:..| .:.|.|:||.||||||:|||||||.|.:||||||:.||:||::..|||||:||||
Zfish   159 LASPLDKTEGESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWF 223

  Fly   134 QNRRAKWRKQEKVG--------------------PQSHP--YNPYLPGGAATMQTVVGAALPPNP 176
            |||||||||:|:.|                    |:::.  .||...||::....|.|..:|.:.
Zfish   224 QNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRPENYAQIQNPSWIGGSSAASPVPGCVVPCDS 288

  Fly   177 FTHLGFQLRKPFDAQHAANLAAFRYPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQ 241
            .|..                                        .|||  ||..:|:    |.| 
Zfish   289 VTSC----------------------------------------MPPH--PHAASGV----SDF- 306

  Fly   242 SLLANMTAVPRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTAHPPPPQAPP 306
                          ||.|      ||..|.....:.|...||..|                    
Zfish   307 --------------LGVP------SPGSHMGQTHMGSLFGSPGMG-------------------- 331

  Fly   307 QMPVGVQPAQLSPQHLVGIALTQQASSLSPTQTSPVALTLSHSPQRQLPPPSHQAPPPPPRAATP 371
               .|:....|               ::.|                                   
Zfish   332 ---TGINGYDL---------------NMDP----------------------------------- 343

  Fly   372 PEDRRTSSIAALRLKAREH 390
              ||::|||||||:||:||
Zfish   344 --DRKSSSIAALRMKAKEH 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alNP_722629.1 Homeobox 89..141 CDD:278475 39/51 (76%)
OAR 374..391 CDD:281777 13/17 (76%)
alx4aXP_001340966.1 Homeobox 179..231 CDD:278475 39/51 (76%)
OAR 344..361 CDD:281777 13/17 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24329
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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