DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stip1 and Hop2

DIOPT Version :9

Sequence 1:NP_477354.1 Gene:Stip1 / 33202 FlyBaseID:FBgn0024352 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_176461.1 Gene:Hop2 / 842572 AraportID:AT1G62740 Length:571 Species:Arabidopsis thaliana


Alignment Length:574 Identity:241/574 - (41%)
Similarity:320/574 - (55%) Gaps:95/574 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NELKEKGNQALSAEKFDEAVAAYTEAIALDDQNHVLYSNRSAAFAKAGKFQEALEDAEKTIQLNP 69
            :|.|.|||.|.|:..|:.||..:|:||.|...||||:||||||.|....:.|||.||:||::|.|
plant     3 DEAKAKGNAAFSSGDFNSAVNHFTDAINLTPTNHVLFSNRSAAHASLNHYDEALSDAKKTVELKP 67

  Fly    70 TWPKGYSRKGAAAAGLNDFMKAFEAYNEGLKYDPTNAILLQGRMETTASALSFMQSQGDIP---- 130
            .|.|||||.|||..|||.|.:|.|||::||:.||:|..|..|..:..|||   .:|:...|    
plant    68 DWGKGYSRLGAAHLGLNQFDEAVEAYSKGLEIDPSNEGLKSGLADAKASA---SRSRASAPNPFG 129

  Fly   131 -----------MDVDP------------------------------------------------Q 136
                       :..||                                                |
plant   130 DAFQGPEMWSKLTADPSTRGLLKQPDFVNMMKEIQRNPSNLNLYLQDQRVMQALGVLLNIQIRTQ 194

  Fly   137 QA-------------RSRRAPSPPPAKPAEPPKPAEPRVEDMTEEQKNKYFARKEKELGNAAYKK 188
            ||             .||:.|.....:..||....||   :..||::.|..|:||||||||||||
plant   195 QAGDDMEIGEEEMAVPSRKEPEVEKKRKPEPEPEPEP---EFGEEKQKKLKAQKEKELGNAAYKK 256

  Fly   189 KDFETALKHYHAAIEHDPTDITFYNNIAAVHFERKEYEECIKQCEKGIEVGRESRADFKLIAKSF 253
            ||||||::||..|:|.|..||::..|.||||.|..:|:||||.|:|.:|.|||.|:|:|::||:.
plant   257 KDFETAIQHYSTAMEIDDEDISYITNRAAVHLEMGKYDECIKDCDKAVERGRELRSDYKMVAKAL 321

  Fly   254 ARIGNTYRKL----ENYKQAKVYYEKAMSEHRTPEIKTSLSEVEAKIKEEERMAYINPEKAEEEK 314
            .|.|....|:    ::|:.....|:||::|||.||....|:|.|...||.|:..|.:|...:||:
plant   322 TRKGTALGKMAKVSKDYEPVIQTYQKALTEHRNPETLKRLNEAERAKKELEQQEYYDPNIGDEER 386

  Fly   315 EQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKDCDTCIKLDEKFIK 379
            |:||.|||:..|..||:||||||||||.||:.|||||||||||.|...||||.:.||:||..|:|
plant   387 EKGNDFFKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFLK 451

  Fly   380 GYIRKGKILQGMQQQSKAQAAYQKALELDPNNAEAIEGYRQCSMNFQR------NPQEVLK---N 435
            ||.|||.:...|::...|...|||.||.||||.|.::|.::|.....:      .|:|:.:   .
plant   452 GYSRKGAVQFFMKEYDNAMETYQKGLEHDPNNQELLDGVKRCVQQINKANRGDLTPEELKERQAK 516

  Fly   436 AMSDPEIQQILKDPAMRMILEQMQSDPNAVKEHLQNPAIADKIMKLLESGIIQI 489
            .|.|||||.||.||.||.:|..:|.:|.|.::|:|||.|.:||.||:.|||:|:
plant   517 GMQDPEIQNILTDPVMRQVLSDLQENPAAAQKHMQNPMIMNKIQKLISSGIVQM 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Stip1NP_477354.1 TPR_11 6..69 CDD:290150 33/62 (53%)
TPR repeat 7..32 CDD:276809 11/24 (46%)
TPR repeat 37..67 CDD:276809 18/29 (62%)
TPR_11 40..103 CDD:290150 36/62 (58%)
TPR repeat 72..100 CDD:276809 17/27 (63%)
TPR_11 175..237 CDD:290150 39/61 (64%)
TPR repeat 175..203 CDD:276809 22/27 (81%)
TPR_1 181..208 CDD:278916 19/26 (73%)
TPR_12 205..278 CDD:290160 32/76 (42%)
TPR repeat 208..238 CDD:276809 15/29 (52%)
TPR repeat 250..278 CDD:276809 9/31 (29%)
TPR_1 250..>276 CDD:278916 7/29 (24%)
TPR_11 309..375 CDD:290150 42/65 (65%)
TPR repeat 310..338 CDD:276809 16/27 (59%)
TPR_1 <317..343 CDD:278916 18/25 (72%)
TPR repeat 343..373 CDD:276809 20/29 (69%)
TPR_1 378..411 CDD:278916 15/32 (47%)
TPR repeat 378..406 CDD:276809 11/27 (41%)
STI1 439..478 CDD:128966 20/38 (53%)
Hop2NP_176461.1 PLN03088 1..>102 CDD:215568 54/98 (55%)
TPR repeat 2..30 CDD:276809 12/26 (46%)
TPR repeat 35..65 CDD:276809 18/29 (62%)
TPR repeat 70..98 CDD:276809 17/27 (63%)
STI1 134..188 CDD:407696 2/53 (4%)
3a0801s09 192..>486 CDD:273380 142/296 (48%)
TPR repeat 243..271 CDD:276809 22/27 (81%)
TPR repeat 276..306 CDD:276809 15/29 (52%)
TPR repeat 318..349 CDD:276809 8/30 (27%)
TPR repeat 386..410 CDD:276809 14/23 (61%)
TPR repeat 415..445 CDD:276809 20/29 (69%)
TPR repeat 450..478 CDD:276809 11/27 (41%)
STI1 512..564 CDD:407696 25/51 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 59 1.000 Domainoid score I3894
eggNOG 1 0.900 - - E2759_KOG0548
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4965
Inparanoid 1 1.050 391 1.000 Inparanoid score I497
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D933764at2759
OrthoFinder 1 1.000 - - FOG0001589
OrthoInspector 1 1.000 - - otm3416
orthoMCL 1 0.900 - - OOG6_102012
Panther 1 1.100 - - O PTHR22904
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2280
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.830

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