DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stip1 and Hop1

DIOPT Version :9

Sequence 1:NP_477354.1 Gene:Stip1 / 33202 FlyBaseID:FBgn0024352 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_172691.1 Gene:Hop1 / 837781 AraportID:AT1G12270 Length:572 Species:Arabidopsis thaliana


Alignment Length:568 Identity:230/568 - (40%)
Similarity:310/568 - (54%) Gaps:84/568 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ELKEKGNQALSAEKFDEAVAAYTEAIALDDQNHVLYSNRSAAFAKAGKFQEALEDAEKTIQLNPT 70
            |.|.|||.|.|:..|..|:..:||||||...||||:||||||.|...::.|||.||::||:|.|.
plant     4 EAKAKGNAAFSSGDFTTAINHFTEAIALAPTNHVLFSNRSAAHASLHQYAEALSDAKETIKLKPY 68

  Fly    71 WPKGYSRKGAAAAGLNDFMKAFEAYNEGLKYDPTNAILLQGRMETTASAL--------------- 120
            |||||||.|||..|||.|..|..||.:||..||||..|..|..:..||..               
plant    69 WPKGYSRLGAAHLGLNQFELAVTAYKKGLDVDPTNEALKSGLADAEASVARSRAAPNPFGDAFQG 133

  Fly   121 -------------------------------------------SFMQSQG---DIPMDVDPQQAR 139
                                                       ..|||.|   ::.....|.|..
plant   134 PEMWTKLTSDPSTRGFLQQPDFVNMMQEIQKNPSSLNLYLKDQRVMQSLGVLLNVKFRPPPPQGD 198

  Fly   140 SRRAP----------SPPPAKPAEPPKPAEPRVEDMTEEQKNKYFARKEKELGNAAYKKKDFETA 194
            ....|          .|...|..||....||.|.:..|:::.|..|:||||||||||||||||||
plant   199 EAEVPESDMGQSSSNEPEVEKKREPEPEPEPEVTEEKEKKERKEKAKKEKELGNAAYKKKDFETA 263

  Fly   195 LKHYHAAIEHDPTDITFYNNIAAVHFERKEYEECIKQCEKGIEVGRESRADFKLIAKSFARIGNT 259
            ::||..|||.|..||::..|.|||:.|..:|.|||:.|.|.:|.|||.|:|:|::|::..|.|..
plant   264 IQHYSTAIEIDDEDISYLTNRAAVYLEMGKYNECIEDCNKAVERGRELRSDYKMVARALTRKGTA 328

  Fly   260 YRKL----ENYKQAKVYYEKAMSEHRTPEIKTSLSEVEAKIKEEERMAYINPEKAEEEKEQGNLF 320
            ..|:    ::|:.|...::||::|||.|:....|::.|...||.|:..|.:|:..:||:|:||.|
plant   329 LTKMAKCSKDYEPAIEAFQKALTEHRNPDTLKRLNDAERAKKEWEQKQYFDPKLGDEEREKGNDF 393

  Fly   321 FKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKDCDTCIKLDEKFIKGYIRKG 385
            ||:..|..|:|||||||||||:|.|.||||||.||||.|...||||.:.||:||..|.|||.||.
plant   394 FKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASYTKLGAMPEGLKDAEKCIELDPTFSKGYSRKA 458

  Fly   386 KILQGMQQQSKAQAAYQKALELDPNNAEAIEGYRQCSMNFQR------NPQEVLK---NAMSDPE 441
            .:...:::...|...||..||.||:|.|.::|.::|.....:      .|:|:.:   ..|.|||
plant   459 AVQFFLKEYDNAMETYQAGLEHDPSNQELLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPE 523

  Fly   442 IQQILKDPAMRMILEQMQSDPNAVKEHLQNPAIADKIMKLLESGIIQI 489
            ||.||.||.||.:|..:|.:|:|.::|:|||.:.:||.||:.:||:|:
plant   524 IQNILTDPVMRQVLSDLQENPSAAQKHMQNPMVMNKIQKLISAGIVQM 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Stip1NP_477354.1 TPR_11 6..69 CDD:290150 34/62 (55%)
TPR repeat 7..32 CDD:276809 11/24 (46%)
TPR repeat 37..67 CDD:276809 18/29 (62%)
TPR_11 40..103 CDD:290150 36/62 (58%)
TPR repeat 72..100 CDD:276809 17/27 (63%)
TPR_11 175..237 CDD:290150 38/61 (62%)
TPR repeat 175..203 CDD:276809 22/27 (81%)
TPR_1 181..208 CDD:278916 20/26 (77%)
TPR_12 205..278 CDD:290160 29/76 (38%)
TPR repeat 208..238 CDD:276809 13/29 (45%)
TPR repeat 250..278 CDD:276809 8/31 (26%)
TPR_1 250..>276 CDD:278916 6/29 (21%)
TPR_11 309..375 CDD:290150 41/65 (63%)
TPR repeat 310..338 CDD:276809 16/27 (59%)
TPR_1 <317..343 CDD:278916 18/25 (72%)
TPR repeat 343..373 CDD:276809 19/29 (66%)
TPR_1 378..411 CDD:278916 12/32 (38%)
TPR repeat 378..406 CDD:276809 8/27 (30%)
STI1 439..478 CDD:128966 19/38 (50%)
Hop1NP_172691.1 TPR repeat 2..30 CDD:276809 12/25 (48%)
TPR repeat 35..65 CDD:276809 18/29 (62%)
TPR repeat 70..98 CDD:276809 17/27 (63%)
STI1 133..187 CDD:375364 4/53 (8%)
3a0801s09 <250..>487 CDD:273380 115/236 (49%)
TPR repeat 277..307 CDD:276809 13/29 (45%)
TPR repeat 319..350 CDD:276809 7/30 (23%)
TPR repeat 387..411 CDD:276809 14/23 (61%)
PLN03088 388..>523 CDD:215568 61/134 (46%)
TPR repeat 416..446 CDD:276809 19/29 (66%)
TPR repeat 451..479 CDD:276809 8/27 (30%)
STI1 513..565 CDD:375364 24/51 (47%)
PLN03088 1..>101 CDD:215568 54/96 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 59 1.000 Domainoid score I3894
eggNOG 1 0.900 - - E2759_KOG0548
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4965
Inparanoid 1 1.050 391 1.000 Inparanoid score I497
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D933764at2759
OrthoFinder 1 1.000 - - FOG0001589
OrthoInspector 1 1.000 - - otm3416
orthoMCL 1 0.900 - - OOG6_102012
Panther 1 1.100 - - O PTHR22904
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2280
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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