DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stip1 and CG34297

DIOPT Version :10

Sequence 1:NP_477354.1 Gene:Stip1 / 33202 FlyBaseID:FBgn0024352 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_001097696.1 Gene:CG34297 / 5740802 FlyBaseID:FBgn0085326 Length:233 Species:Drosophila melanogaster


Alignment Length:247 Identity:60/247 - (24%)
Similarity:105/247 - (42%) Gaps:50/247 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 AIEHDPTDITFYNNIAAVHFERKEYEECIKQCEKGIEVGRESRADFKLIAKSFARIGNTYRKLEN 265
            :::|...|..|.::.:.|       ||.::..| .::|..|..|:           |....| .:
  Fly     3 SLQHPQIDECFLDSESTV-------EEVVRLLE-NLQVPNEEEAE-----------GQEKPK-RS 47

  Fly   266 YKQAKVYYEK-AMSEHRTPEIKTSLSEVEAKIKEEER-------------------MAYINPEKA 310
            .|.:.:..|. .::|.:|| |....:...:|.|.:.|                   |......||
  Fly    48 LKSSTITEESFIITERKTP-IPVISAPTSSKEKSKPRTFNRIDRSKDRFPFMRQVEMDLDQRSKA 111

  Fly   311 EEEKEQ--------GNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKDC 367
            ..|:|:        ||..::||:|..|:|.|||||:...|...||.|||.|:.|...|..|:.||
  Fly   112 RLERERVAQNFRKLGNAEYRKGNYEAAMKVYTEAIENIRDSHILYINRALCFIKSGKFKRGIVDC 176

  Fly   368 DTCI-KLDEKFIKGYIRKGKILQGMQQQSKAQAAYQKALELDPNNAEAIEGY 418
            |..: |||||.::.::.:....:|:..:|..:...:.|.:.:....:.|:.:
  Fly   177 DFVLNKLDEKNLRAWMYRAMAYKGLNDESNFENCVKYARKFNSKQMDFIDDF 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Stip1NP_477354.1 TPR repeat 7..32 CDD:276809
TPR 10..276 CDD:440225 14/75 (19%)
TPR repeat 37..67 CDD:276809
TPR repeat 72..100 CDD:276809
LapB 173..415 CDD:442196 59/242 (24%)
TPR repeat 175..203 CDD:276809 0/1 (0%)
TPR repeat 208..238 CDD:276809 6/29 (21%)
TPR repeat 250..278 CDD:276809 4/28 (14%)
TPR repeat 310..338 CDD:276809 14/35 (40%)
TPR repeat 343..373 CDD:276809 12/30 (40%)
TPR repeat 378..406 CDD:276809 3/27 (11%)
STI1 429..482 CDD:436075
CG34297NP_001097696.1 NlpI <104..>203 CDD:443815 35/98 (36%)
TPR repeat 119..147 CDD:276809 11/27 (41%)
TPR repeat 152..183 CDD:276809 12/30 (40%)
TPR repeat 188..216 CDD:276809 3/27 (11%)
Blue background indicates that the domain is not in the aligned region.

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