DRSC/TRiP Functional Genomics Resources

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Protein Alignment U2af38 and AT1G10320

DIOPT Version :10

Sequence 1:NP_477208.1 Gene:U2af38 / 33201 FlyBaseID:FBgn0017457 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_172503.1 Gene:AT1G10320 / 837571 AraportID:AT1G10320 Length:757 Species:Arabidopsis thaliana


Alignment Length:370 Identity:101/370 - (27%)
Similarity:141/370 - (38%) Gaps:134/370 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSD 73
            ||||:||.:|.|:.|.||||.|.||||:|..|..|.|:|::|:|..|..:.:..:|    ...:|
plant   237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQDEG----LEYTD 297

  Fly    74 EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFG 138
            ||.:..|:.|:|||..|.. ||||:....||.|...||.||||:.:|:...|..|...:|.|:|.
plant   298 EEAELCYEEFYEDVHTEFL-KYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFA 361

  Fly   139 GRPVYSELSPVTDFREACCRQY---EMGECTRSGFCNFMH------------------------- 175
            |:.|..|...::.::.|.|.:|   .:..|:|...|||:|                         
plant   362 GKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWADHDRPPPRFWIHK 426

  Fly   176 ------------------------LKPISRELRRYLYSRRRRARS------------RSR----- 199
                                    :..:|.:..|. .|||.|:|.            |||     
plant   427 MTSLFGYSDEKHMEHESSGSLNDSISDLSTDSHRQ-PSRRSRSRDHDHANVGSTPSYRSRKYHGD 490

  Fly   200 ----------------------SPGR-------------------RRGSRSRSRSPGRRGG---- 219
                                  ||.|                   .|.||....|||.|.|    
plant   491 TQDSTREDKLRRHAENCHDGDDSPSRDGSLEREMYKERRYAKDTLHRDSRWSEHSPGHRVGRKRI 555

  Fly   220 -GR---GDGVGGGNY----LNNERDNMRGNDRG------NDRDRR 250
             ||   .|...|.:|    ..::|...||.|.|      |::||:
plant   556 HGRYSDDDSADGDDYGRRGTGHKRKPRRGTDSGVQEQMDNEKDRK 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2af38NP_477208.1 zf-CCCH 13..39 CDD:459885 15/25 (60%)
RRM_U2AF35 43..148 CDD:409954 38/104 (37%)
zf-CCCH 151..177 CDD:459885 9/77 (12%)
AT1G10320NP_172503.1 tolA_full <31..>103 CDD:274303
zf-CCCH 246..265 CDD:459885 12/18 (67%)
RRM_U2AFBPL 273..371 CDD:409956 37/102 (36%)
U2AF_lg 579..>671 CDD:273727 8/22 (36%)
U2AF_lg 635..>740 CDD:273727
Blue background indicates that the domain is not in the aligned region.

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