DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment U2af38 and U2AF35B

DIOPT Version :9

Sequence 1:NP_001259814.1 Gene:U2af38 / 33201 FlyBaseID:FBgn0017457 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_199096.1 Gene:U2AF35B / 834293 AraportID:AT5G42820 Length:283 Species:Arabidopsis thaliana


Alignment Length:274 Identity:136/274 - (49%)
Similarity:173/274 - (63%) Gaps:39/274 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSAD-- 63
            |||:||||||||||:|||.||||||||||||||||:||:||.|.|:||.|:|..|.......|  
plant     1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQ 65

  Fly    64 GSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKA 128
            |..|    ...::|:|:::|:||:|.|. :|:||:|.:||||||.||::||||:.|:.|..|..|
plant    66 GQPL----DPSKIQDHFEDFYEDIFEEL-NKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAA 125

  Fly   129 ANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRRR 193
            ...|..|::.|||:.::.|||||||||.|||||...|.|.|:|||||:|.|||||||.|:.|.||
plant   126 LQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISRELRRKLFGRYRR 190

  Fly   194 ARSRSRSPGRRRGSRSRSRSPGRRGGGRGDGVGGGNYLNNERDNMRGNDRGNDRDRRKGGGGGGG 258
            :        .||||||||||...|               .:|::.|..:||:.|||.:.|.|...
plant   191 S--------YRRGSRSRSRSISPR---------------RKREHSRERERGDVRDRDRHGNGKRS 232

  Fly   259 G---------GGGR 263
            .         ||||
plant   233 SDRSERHDRDGGGR 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U2af38NP_001259814.1 zf-CCCH 13..39 CDD:279036 22/25 (88%)
RRM_U2AF35 43..148 CDD:240982 42/106 (40%)
zf-CCCH 151..177 CDD:279036 18/25 (72%)
U2AF35BNP_199096.1 zf-CCCH 13..39 CDD:395517 22/25 (88%)
RRM_U2AF35B 44..145 CDD:409955 41/105 (39%)
ZnF_C3H1 148..174 CDD:214632 18/25 (72%)
SF-CC1 212..>279 CDD:273721 12/35 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 66 1.000 Domainoid score I3566
eggNOG 1 0.900 - - E1_KOG2202
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 260 1.000 Inparanoid score I975
OMA 1 1.010 - - QHG56320
OrthoDB 1 1.010 - - D1340384at2759
OrthoFinder 1 1.000 - - FOG0002537
OrthoInspector 1 1.000 - - otm3367
orthoMCL 1 0.900 - - OOG6_101418
Panther 1 1.100 - - O PTHR12620
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1660
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

Return to query results.
Submit another query.