DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Sfrp1

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001263641.2 Gene:Sfrp1 / 84402 RGDID:621074 Length:314 Species:Rattus norvegicus


Alignment Length:128 Identity:28/128 - (21%)
Similarity:48/128 - (37%) Gaps:23/128 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 DLTDFHTEKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITME 177
            :|.:..|..|:..:.:.:..|.: ..|....|.|||::|.|.|     .|....|...:|....:
  Rat    80 NLLEHETMAEVKQQASSWVPLLN-KNCHMGTQVFLCSLFAPVC-----LDRPIYPCRWLCEAVRD 138

  Fly   178 PCR--ILYNTTFFPKFLRCNETLFPTKCTNGARGMKFNGTGQCLSPLVPTDTSASYYPGIEGC 238
            .|.  :.:...::|:.|:|:               ||.....|::...|..|.||...|...|
  Rat   139 SCEPVMQFFGFYWPEMLKCD---------------KFPEGDVCIAMTPPNATEASKPQGTTVC 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 22/109 (20%)
Frizzled 246..568 CDD:279827
Sfrp1NP_001263641.2 CRD_SFRP1 52..175 CDD:143552 23/115 (20%)
NTR_Sfrp1_like 183..306 CDD:239635 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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