DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Sfrp1

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001263641.2 Gene:Sfrp1 / 84402 RGDID:621074 Length:314 Species:Rattus norvegicus


Alignment Length:128 Identity:28/128 - (21%)
Similarity:48/128 - (37%) Gaps:23/128 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 DLTDFHTEKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITME 177
            :|.:..|..|:..:.:.:..|.: ..|....|.|||::|.|.|     .|....|...:|....:
  Rat    80 NLLEHETMAEVKQQASSWVPLLN-KNCHMGTQVFLCSLFAPVC-----LDRPIYPCRWLCEAVRD 138

  Fly   178 PCR--ILYNTTFFPKFLRCNETLFPTKCTNGARGMKFNGTGQCLSPLVPTDTSASYYPGIEGC 238
            .|.  :.:...::|:.|:|:               ||.....|::...|..|.||...|...|
  Rat   139 SCEPVMQFFGFYWPEMLKCD---------------KFPEGDVCIAMTPPNATEASKPQGTTVC 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 22/109 (20%)
7tmF_SMO_homolog 245..568 CDD:320158
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
Sfrp1NP_001263641.2 CRD_SFRP1 52..175 CDD:143552 23/115 (20%)
NTR_Sfrp1_like 183..306 CDD:239635 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.

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