DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smo and sfrp1b

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001077040.1 Gene:sfrp1b / 798564 ZFINID:ZDB-GENE-061103-1 Length:300 Species:Danio rerio


Alignment Length:189 Identity:41/189 - (21%)
Similarity:61/189 - (32%) Gaps:42/189 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 DDKPWFDGLDSRHIQCVRRAR----CYPTSNATNTCFG-SKLPYELSSLDLTDFHTEKELNDKLN 128
            :|..|......:|..||....    |:      |..:| ..||      :|.|..|..|:..:..
Zfish    27 EDYIWPPDSSDKHPPCVDIPEDLRLCF------NVGYGRMMLP------NLLDHETIAEVKQQAV 79

  Fly   129 DYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNTTFF--PKF 191
            .:..|.| ..|....|..||::|.|.|     .|....|....|....:.|..:.....|  |:.
Zfish    80 SWVPLVH-KACHKGTQVLLCSLFAPVC-----LDRPLYPCRWFCEAVRDSCAPIMQAFGFPWPEM 138

  Fly   192 LRCNETLFPTKCTNGARGMKFNGTGQ-CLSPLVPTDTSASYYPGIEGCGVRCKDPLYTD 249
            |||::  ||              .|: |:|.............|.......|::.:.||
Zfish   139 LRCDK--FP--------------LGEVCISSNATKSNETDLIAGGSSVCPACENEMKTD 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 31/142 (22%)
7tmF_SMO_homolog 245..568 CDD:320158 2/5 (40%)
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
sfrp1bNP_001077040.1 CRD_SFRP1 36..159 CDD:143552 35/156 (22%)
NTR_Sfrp1_like 170..292 CDD:239635 3/12 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.