DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Fzd2

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_742032.2 Gene:Fzd2 / 64512 RGDID:71012 Length:570 Species:Rattus norvegicus


Alignment Length:529 Identity:124/529 - (23%)
Similarity:217/529 - (41%) Gaps:120/529 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 HTEKE-LNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRI 181
            ||.:| ...:::.:|.|..| :|...::.|||:::.|.|..:   :....|...:|....:.|..
  Rat    68 HTNQEDAGLEVHQFYPLVKV-QCSPELRFFLCSMYAPVCTVL---EQAIPPCRSICERARQGCEA 128

  Fly   182 LYNTTFF--PKFLRCNE-------------------------TLFPTKCTNGARG---------- 209
            |.|...|  |:.|||..                         |..|:....||.|          
  Rat   129 LMNKFGFQWPERLRCEHFPRHGAEQICVGQNHSEDGTPALLTTAPPSGLQPGAGGTPGGPGGGGA 193

  Fly   210 ------------------------MKFNGTGQCLSPLVPTDTSASYYPGIEGCGVRCKDPLYTDD 250
                                    .||.|...|.:|..|.....|.:              ::.:
  Rat   194 P
PRYATLEHPFHCPRVLKVPSYLSYKFLGERDCAAPCEPARPDGSMF--------------FSQE 244

  Fly   251 EHRQIHK-LIGWAGSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFLIACVGWLLQFTSGS 314
            |.|.... ::.|: .:|..|..|.|:|:.:|.:.. :||...:.:::.|:.:..|.::..|.  .
  Rat   245 ETRFARLWILTWS-VLCCASTFFTVTTYLVDMQRF-RYPERPIIFLSGCYTMVSVAYIAGFV--L 305

  Fly   315 REDIVCR----KDGTLRHSEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYAWHWRA---MGHV 372
            :|.:||.    :||.....:.|..|  .|.::|:::|:|..|..:|:|.|:..|...|   .|| 
  Rat   306 QERVVCNERFSEDGYRTVVQGTKKE--GCTILFMMLYFFSMASSIWWVILSLTWFLAAGMKWGH- 367

  Fly   373 QDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVGICFVGYINHSMRAGLLLGPLCGVILI 437
             :.|:....||||.||::|.|.|||.:|..::||:.:.|:||||..:.....|.:|.||...:.|
  Rat   368 -EAIEANSQYFHLAAWAVPAVKTITILAMGQIDGDLLSGVCFVGLNSLDPLRGFVLAPLFVYLFI 431

  Fly   438 GGYFITRGMVMLFG----LKHFANDIKSTSASNKIHLIIMRMGVCALLTLVFILVAIACHVTEFR 498
            |..|:..|.|.||.    :||      ..:.:.|:..:::|:||.::|..|...:.|||:..|..
  Rat   432 GTSFLLAGFVSLFRIRTIMKH------DGTKTEKLERLMVRIGVFSVLYTVPATIVIACYFYEQA 490

  Fly   499 HADEWAQSF-RQFIICKISSV-----FEEKSSCRIENRPSVGVLQLHLLCLFSSGIVMSTWCWTP 557
            ..:.|.:|: .|.  ||..::     :..:.|      |...|..:..|.....||....|.|:.
  Rat   491 FREHWERSWVSQH--CKSLAIPCPAHYTPRMS------PDFTVYMIKYLMTLIVGITSGFWIWSG 547

  Fly   558 SSIETWKRY 566
            .::.:|:::
  Rat   548 KTLHSWRKF 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 31/164 (19%)
Frizzled 246..568 CDD:279827 90/339 (27%)
Fzd2NP_742032.2 CRD_FZ2 40..166 CDD:143573 22/101 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..194 5/27 (19%)
7tmF_FZD2 239..568 CDD:320373 90/354 (25%)
TM helix 1 249..273 CDD:320373 6/24 (25%)
TM helix 2 282..303 CDD:320373 2/20 (10%)
TM helix 3 333..355 CDD:320373 7/21 (33%)
TM helix 4 376..392 CDD:320373 10/15 (67%)
TM helix 5 414..437 CDD:320373 7/22 (32%)
TM helix 6 468..490 CDD:320373 8/21 (38%)
TM helix 7 519..544 CDD:320373 6/30 (20%)
Lys-Thr-X-X-X-Trp motif, mediates interaction with the PDZ domain of Dvl family members. /evidence=ECO:0000250 548..553 0/4 (0%)
PDZ-binding 568..570
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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