DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and frzb

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001005438.1 Gene:frzb / 448021 XenbaseID:XB-GENE-481353 Length:319 Species:Xenopus tropicalis


Alignment Length:115 Identity:28/115 - (24%)
Similarity:41/115 - (35%) Gaps:32/115 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 FLCAVFKPKCEKINGEDMVYLPSYEMC---RITMEPCRILYNTTFFPKFLRCNETLFPTKCTNGA 207
            ||||::.|.| .|:.:.....|...:|   |...||..|.|..| :|:.|.|.|           
 Frog    83 FLCAMYAPIC-TIDFQHEPIKPCKSVCERARAGCEPILIKYRHT-WPESLACEE----------- 134

  Fly   208 RGMKFNGTGQCLSP--LVPTDTSASYYPGIE------GCG------VRCK 243
              :.....|.|:||  ::..:......|...      .||      .:||
 Frog   135 --LPVYDRGVCISPEAIITVEQGTDSMPDFPMDSNNGNCGSTAGEHCKCK 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 21/77 (27%)
7tmF_SMO_homolog 245..568 CDD:320158
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
frzbNP_001005438.1 CRD_SFRP3 28..153 CDD:143550 23/84 (27%)
NTR_Sfrp3_like 189..299 CDD:239636
Blue background indicates that the domain is not in the aligned region.

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