DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Sfrp2

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001094170.1 Gene:Sfrp2 / 310552 RGDID:735163 Length:295 Species:Rattus norvegicus


Alignment Length:118 Identity:29/118 - (24%)
Similarity:51/118 - (43%) Gaps:10/118 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 RRARCYPTSNATNTCFGSKLPYELSSL-DLTDFHTEKELNDKLNDYYALKHVPKCWAAIQPFLCA 149
            :|:.|.|.......|.|  :.|:...| :|....|.||:.::...:..|. :.:|....:.|||:
  Rat    36 KRSNCKPIPANLQLCHG--IEYQNMRLPNLLGHETMKEVLEQAGAWIPLV-MKQCHPDTKKFLCS 97

  Fly   150 VFKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNTTFF--PKFLRCNETLFP 200
            :|.|.|  ::..|....|.:.:|....:.|..:.:...|  |..|.|:.  ||
  Rat    98 LFAPVC--LDDLDETIQPCHSLCVQVKDRCAPVMSAFGFPWPDMLECDR--FP 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 29/118 (25%)
7tmF_SMO_homolog 245..568 CDD:320158
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
Sfrp2NP_001094170.1 CRD_SFRP2 36..163 CDD:143555 29/118 (25%)
NTR_Sfrp1_like 169..295 CDD:239635
Blue background indicates that the domain is not in the aligned region.

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