DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and fzd5

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_571209.2 Gene:fzd5 / 30364 ZFINID:ZDB-GENE-990415-218 Length:592 Species:Danio rerio


Alignment Length:507 Identity:131/507 - (25%)
Similarity:220/507 - (43%) Gaps:88/507 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 EKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEM----CRITME--- 177
            :.|:..:::.::.|..: .|...:..|||:::.|.|          |..|:.    ||...|   
Zfish    72 QDEVGLEVHQFWPLVRI-HCSPDLLFFLCSMYTPIC----------LQDYKKPLPPCRSVCERAK 125

  Fly   178 ----PCRILYNTTFFPKFLRCNE--------------------TL---FPTKCTNG--------- 206
                |..|.|... :|:.:.|.:                    ||   ||.....|         
Zfish   126 RGCSPLMIQYGFE-WPERMSCEQLPMLGDTDRLCMDRNSSETTTLSPPFPKPTPKGTPRHRATAK 189

  Fly   207 -ARGMKFNGTGQCLSPLVPTDTSASYYP--------GIEGCGVRCKDPLYTDDEHRQIHKLIGWA 262
             |...|.:....|..||||....|  :|        .:..|.:.|..|.::.||.......||..
Zfish   190 SAPPQKCDRECHCRGPLVPIKKEA--HPLHNRVNTGSLPNCALPCHQPYFSQDERTFTTFWIGLW 252

  Fly   263 GSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFLIACVGWLLQFTSGSREDIVCRKDGTLR 327
            ..:|.:|....|:||.||.:.. |||...:.::..|:|...:|::::..:| .|.:.|...|..:
Zfish   253 SVLCFVSTFTTVATFLIDMERF-KYPERPIIFLAACYLFVSLGYIVRLLAG-HERVACEGTGDQQ 315

  Fly   328 H-SEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYAWHWRA-MGHVQDRIDKKGSYFHLVAWSL 390
            | ...|.|..| |.::|:|:|:|..|..:|:|.|::.|...| |....:.|.....||||.||.:
Zfish   316 HILYDTTGPAL-CTLVFLLIYFFGMASSIWWVVLSFTWFLAAGMKWGNEAIAGYSQYFHLAAWLV 379

  Fly   391 PLVLTITTMAFSEVDGNSIVGICFVGYINHSMRA--GLLLGPLCGVILIGGYFITRGMVMLFGLK 453
            |.|.:|..:|.|.|||:.:.|||:||  |.|:..  |.:|.||...:..|..|:..|.|.||.::
Zfish   380 PSVKSIAVLALSSVDGDPVAGICYVG--NQSLEGLRGFVLAPLVVYLFTGSLFLLAGFVSLFRIR 442

  Fly   454 HFANDIKSTSASNKIHLIIMRMGVCALLTLVFILVAIACHVTEFRHADEWAQSFRQFIICKISSV 518
            ....  :..:.::|:..:::|:|:..:|..|...:.:||.|.|..:...|.::    :.|...| 
Zfish   443 SVIK--QGGTKTDKLEKLMIRIGLFTVLYTVPATIVVACLVYEQHYRPSWERA----LACSCPS- 500

  Fly   519 FEEKSSCRIENRPSVGVLQL-HLLCLFSSGIVMSTWCWTPSSIETWKRYIRK 569
              |:.  |:...|...|..| :.:||. .||....|.|:..::|:|:|:|.:
Zfish   501 --ERQ--RLGMGPDYAVFMLKYFMCLV-VGITSGVWIWSGKTLESWRRFIAR 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 26/144 (18%)
Frizzled 246..568 CDD:279827 95/326 (29%)
fzd5NP_571209.2 CRD_FZ5_like 44..163 CDD:143565 18/102 (18%)
7tmF_FZD5 235..546 CDD:320377 96/327 (29%)
TM helix 1 244..269 CDD:320377 7/24 (29%)
TM helix 2 278..299 CDD:320377 3/20 (15%)
TM helix 3 328..354 CDD:320377 9/25 (36%)
TM helix 4 371..387 CDD:320377 9/15 (60%)
TM helix 5 409..438 CDD:320377 8/28 (29%)
TM helix 6 458..485 CDD:320377 8/26 (31%)
TM helix 7 507..532 CDD:320377 7/25 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D509772at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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