DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smo and fzd4

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001292398.1 Gene:fzd4 / 30363 ZFINID:ZDB-GENE-990415-217 Length:523 Species:Danio rerio


Alignment Length:496 Identity:134/496 - (27%)
Similarity:217/496 - (43%) Gaps:96/496 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 CWAAIQPFLCAVFKPKC-EKINGEDMVYLPSYEMCRITMEPC-RILYNTTF-FPKFLRCNETLFP 200
            |.:.::.|||:|:.|.| ||:   .:...|...||......| .:|....| :|:.|.|  :|||
Zfish    74 CSSQLKFFLCSVYVPMCTEKV---PIPIGPCGSMCMSVKRKCLPVLQEFGFVWPELLNC--SLFP 133

  Fly   201 TKCTNGARGMKFNGTG------QCLSPLVPTDTSA-SYYPGIE---------GCGVRCKDPLYTD 249
            .  ||....|...|.|      ..:.|:.|.:... :...|:|         .|.::|.   |..
Zfish   134 P--TNDQNHMCMEGPGDED
PPFHAVRPVAPQEEECIALGAGVEQYAWVKRSGSCSLQCG---YDT 193

  Fly   250 DEHRQIHKLIG------WAGSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFLIACVGWLL 308
            ..:|:..|:..      || .:|.:|..|.|.||.:| .:...||...:.::::|..|..|.:::
Zfish   194 GLYRRQAKVFTDVWMAVWA-VLCFISTTFTVLTFLVD-SSRFSYPERPIIFLSMCCNIYSVAFIV 256

  Fly   309 QFTSGSREDIVCR----------KDGTLRHSEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYA 363
            :.|.| ||.|.|.          ::|.         :|..|.::|:|.|:|..|..:|:|.||..
Zfish   257 RLTVG-RERISCDLEEAAVPVLVQEGL---------KNTGCAIVFLLTYFFGMASSIWWVILTLT 311

  Fly   364 WHWRA---MGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVGICFVGYINHSMRAG 425
            |...|   .||  :.|:...||||:.||::|.|.||..:....||.:.:.|:|:||..|.....|
Zfish   312 WFLAAGLKWGH--EAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADDLAGMCYVGNQNLDALTG 374

  Fly   426 LLLGPLCGVILIGGYFITRGMVMLFGLKHFANDIKSTSASNKIHLIIMRMGVCALLTLVFILVAI 490
            .::.||...::||..||..|:|.||.::  :|..|..:.::|:..:::::||.::|..|.....|
Zfish   375 FVVAPLFTYLVIGTLFIAAGLVALFKIR--SNLQKDGTKTDKLERLMVKIGVFSVLYTVPATCVI 437

  Fly   491 ACHVTEFRHADEWAQSFRQFIICKISSVFEEKSSCRIENRPSVGVLQLHLLCLFSS---GIVMST 552
            ||:   |.....|| .|||                  ..|.|  .:...:|.:|.|   ||....
Zfish   438 ACY---FYEISNWA-DFRQ------------------TARDS--YMAAEMLRIFMSLLVGITSGM 478

  Fly   553 WCWTPSSIETWKRYIRKKCGKEVVEEVKMPKHKVIAQTWAK 593
            |.|:..::.||:|     |...:|...:..:.|..|..|.|
Zfish   479 WVWSAKTLHTWQR-----CSHRLVHTGRNNRVKRTANGWVK 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 26/90 (29%)
Frizzled 246..568 CDD:279827 96/343 (28%)
fzd4NP_001292398.1 CRD_FZ4 26..150 CDD:143557 26/82 (32%)
Frizzled 195..492 CDD:279827 95/341 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D509772at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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