DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smo and smo

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_571102.2 Gene:smo / 30225 ZFINID:ZDB-GENE-980526-89 Length:822 Species:Danio rerio


Alignment Length:794 Identity:282/794 - (35%)
Similarity:437/794 - (55%) Gaps:111/794 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 NTCFGSKLPYELSSLDLT-DFHTEKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGE 161
            |||.||.|||..:||.|. |..|::|..:||..:..|::.|:|||.|||.||||:.||||  ||:
Zfish    54 NTCLGSPLPYTHTSLILAEDSETQEEAFEKLAMWSGLRNAPRCWAVIQPLLCAVYMPKCE--NGK 116

  Fly   162 DMVYLPSYEMCRITMEPCRILYNTTFFPKFLRC-NETLFPTKCTNGARGMKFNGTGQCLSPLVPT 225
              |.|||..:|:.|..||.|:.....:|.||:| |:..||..|.|..:.:|||.:|||.:|||.|
Zfish   117 --VELPSQHLCQATRNPCSIVERERGWPNFLKCENKEQFPKGCQNEVQKLKFNTSGQCEAPLVKT 179

  Fly   226 DTSASYYPGIEGCGVRCKDPLYTDDEHRQIHKLIGWAGSICLLSNLFVVSTFFIDWKNANKYPAV 290
            |..||:|..:||||::|.:||:|:|||..:|..|...|:|.||...|.::||..||||:|:||||
Zfish   180 DIQASWYKDVEGCGIQCDNPLFTEDEHSDMHSYIAVFGTITLLCTFFTLATFLADWKNSNRYPAV 244

  Fly   291 IVFYINLCFLIACVGWLLQFTSGSREDIVCRKDGTLRHSEPTAGENLSCIVIFVLVYYFLTAGMV 355
            |:||:|.||.|..:|||.||..|:|.:|||:.|.|:|..||::.|.|||::|||:|||.|.:|::
Zfish   245 ILFYVNACFFIGSIGWLAQFMDGARNEIVCKSDNTMRLGEPSSTETLSCVIIFVIVYYSLMSGVI 309

  Fly   356 WFVFLTYAWH--WRAMGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVGICFVGYI 418
            |||.||||||  ::|:|.....:..|.||||||.||:|.:||:..:|.|:||.:|:.|||||||.
Zfish   310 WFVMLTYAWHTSFKALGTTHQPLSGKTSYFHLVTWSIPFILTVAILANSQVDADSVSGICFVGYR 374

  Fly   419 NHSMRAGLLLGPLCGVILIGGYFITRGMVMLFGLKHFANDIKSTSASNKIHLIIMRMGVCALLTL 483
            .:..|||.:|.|:..|::|||||:.||::.||.:|.....:.|..|::||:..::|:|:...|..
Zfish   375 YYEYRAGFVLAPIGFVLVIGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGFLAF 439

  Fly   484 VFILVAIACHVTEFRHADEWAQSFRQFIICKISSVFEEKSS-----CRIENRPSVGVLQLHLLCL 543
            .|:|:...||..:|.:..||.:|||::::|:.:.....:::     |.|:||||:.|.:::|..:
Zfish   440 GFVLITFGCHFYDFFNQAEWERSFREYVLCEANVTIAHQTNKPIPECAIKNRPSLLVGKINLFSM 504

  Fly   544 FSSGIVMSTWCWTPSSIETWKRYIRKKCGKEVVEEVKMPKHKVIAQTWAKRKDF--EDKGRLSIT 606
            |.:||.||||.||.::|..|||...:..|:...|..::.|.|:||:.::|||:.  :.:..||.:
Zfish   505 FGTGIAMSTWVWTKATILIWKRTWFRIIGRSDDEPKRIKKSKMIAKAFSKRKELQKDPEKELSFS 569

  Fly   607 LYN-THTDPV-GLNFDVNDLNSSETNDISSTWAAYLPQCVKRRMALTGAATGNSSSHGPRKNSLD 669
            ::. :|..|| |:|||:|:    .:.::||.||.::.:.|.||.|:                 |.
Zfish   570 MHTVSHEGPVAGINFDLNE----PSIEMSSAWAQHVTKMVARRGAI-----------------LP 613

  Fly   670 SEISVSVRHVSV--ESRRNS---VDSQVSVKIAEMKTKVASR------------------SRGKH 711
            .:|||:.....:  ...||.   |::::|.::.:.|.|...|                  .|.:.
Zfish   614 QDISVTPTGTPIPPPEERNKLWMVEAEISPEMMKRKKKKKKRRKEVRPAGPAADEGNPAYHRREF 678

  Fly   712 GGSS-------------------SNRRTQRRRDYIAAA----------------TGKSSRRRESS 741
            |.|:                   ..|:.|..:|.:..|                .|....|.:.|
Zfish   679 GPSAVPRLPKLPGHRSLVANLWEQQRQQQEEQDMLPGAFPEFRPSCPLPYQDRYGGLGYLRNKPS 743

  Fly   742 TSVESQVIALKKTTYPNASH-------KVGVFAH---HSSKKQHNYTSSMKRRTANAGLD----P 792
            :...:..:.|:.:...:.||       ..|||.|   .:|......|:.:.|.....|:.    .
Zfish   744 SLPLANPLTLRDSMQGDLSHFQQSSWQPKGVFRHLGQEASMMDVGRTAVVPRADGRRGVQIHSRT 808

  Fly   793 SILN-EFLQKNGDF 805
            :::: |.|..:.||
Zfish   809 NLMDAELLDADSDF 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 58/124 (47%)
7tmF_SMO_homolog 245..568 CDD:320158 148/329 (45%)
TM helix 1 254..279 CDD:320158 9/24 (38%)
TM helix 2 289..310 CDD:320158 12/20 (60%)
TM helix 3 340..366 CDD:320158 17/27 (63%)
TM helix 4 382..398 CDD:320158 10/15 (67%)
TM helix 5 420..449 CDD:320158 13/28 (46%)
TM helix 6 471..498 CDD:320158 7/26 (27%)
TM helix 7 529..554 CDD:320158 12/24 (50%)
smoNP_571102.2 CRD_SMO 44..175 CDD:143560 57/122 (47%)
7tmF_SMO_homolog 199..529 CDD:320158 148/336 (44%)
TM helix 1 208..233 CDD:320158 8/24 (33%)
TM helix 2 243..264 CDD:320158 13/20 (65%)
TM helix 3 294..320 CDD:320158 16/25 (64%)
TM helix 4 338..354 CDD:320158 10/15 (67%)
TM helix 5 376..405 CDD:320158 13/28 (46%)
TM helix 6 427..454 CDD:320158 7/26 (27%)
TM helix 7 490..515 CDD:320158 11/24 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 645..687 11/94 (12%)

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