DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and frzb

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_571018.1 Gene:frzb / 30119 ZFINID:ZDB-GENE-990715-1 Length:315 Species:Danio rerio


Alignment Length:184 Identity:41/184 - (22%)
Similarity:67/184 - (36%) Gaps:31/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 CVRRARC---YPTSNATNTCFGSKLPY-ELSSLDLTDFHTEKELNDKLNDYYALKHV-----PKC 139
            ||....|   .|......:|...::|. :....::|........:.:.|...|::..     .:|
Zfish    12 CVLAFACLLEIPRGTGAASCEPIRIPMCKSMPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQC 76

  Fly   140 WAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMC---RITMEPCRILYNTTFFPKFLRCNETLFPT 201
            .|.:..||||::.|.| .|:.:.....|...:|   :...||....||.| :|:.|.|.|     
Zfish    77 SADLLFFLCAMYAPIC-TIDFQHDPIKPCKSVCERAKCGCEPVMKRYNHT-WPESLACEE----- 134

  Fly   202 KCTNGARGMKFNGTGQCLSP--LVPTD-TSASYYPGIEGCGVRCKDPLYTDDEH 252
                    :.....|.|:||  :|..: ...|||.....|... .:|.:..|.|
Zfish   135 --------LPVYDRGVCISPEAIVKAEGPDNSYYQDPAKCNPE-GNPDFPMDSH 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 29/146 (20%)
7tmF_SMO_homolog 245..568 CDD:320158 3/8 (38%)
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
frzbNP_571018.1 CRD_SFRP3 28..153 CDD:143550 30/139 (22%)
NTR_Sfrp3_like 200..310 CDD:239636
Blue background indicates that the domain is not in the aligned region.

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