DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Fzd9

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_695217.1 Gene:Fzd9 / 266608 RGDID:628817 Length:592 Species:Rattus norvegicus


Alignment Length:579 Identity:134/579 - (23%)
Similarity:240/579 - (41%) Gaps:98/579 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 CFGSKLP------YELSSLDLTDFHTEK-ELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKC-E 156
            |...::|      |.|:.:.....||.: |...:|.::..|... .|.:.::.|||:::.|.| :
  Rat    40 CQAMEIPMCRGIGYNLTRMPNLLGHTSQGEAAAQLAEFSPLVQY-GCHSHLRFFLCSLYAPMCTD 103

  Fly   157 KINGEDMVYLPSYEMCRITMEPCRILYNTTFFPKFLRC------------------NETLFPTKC 203
            :::.......|..|..|:...|....:|.. :|..|.|                  |.|..||:.
  Rat   104 QVSTPIPACRPMCEQARLRCAPIMEQFNFG-WPDSLDCARLPTRNDPHALCMEAPENATAGPTEP 167

  Fly   204 TNG-----------------ARGMKFNGTGQCLSPLVPTDTSASYYPGIEGCGVRCKDPLYTDDE 251
            ..|                 |.|....||  |.:|     ....|......|..||...:.....
  Rat   168 HKGLGM
LPVAPRPARPPGDSAPGPGSGGT--CDNP-----EKFQYVEKSRSCAPRCGPGVEVFWS 225

  Fly   252 HRQIHKLIGWA---GSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFLIACVGWLLQFTSG 313
            .|.....:.|.   .::|..|..|.|.||.:: .:..:||...:.::::|:.:..:.:|::..:|
  Rat   226 RRDKDFALVWMAVWSALCFFSTAFTVFTFLLE-PHRFQYPERPIIFLSMCYNVYSLAFLIRAVAG 289

  Fly   314 SREDIVCRKDGTLRHSEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYAWHWRA---MGHVQDR 375
            : :.:.|.::....:......||..|.::|:|:|||..|..:|:|.||..|...|   .||  :.
  Rat   290 A-QSVACDQEAGALYVIQEGLENTGCTLVFLLLYYFGMASSLWWVVLTLTWFLAAGKKWGH--EA 351

  Fly   376 IDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVGICFVGYINHSMRAGLLLGPLCGVILIGGY 440
            |:..|||||:.||.||.:.||..:...:|.|:.:.|:|:|..::.:...|.:|.||...:::|..
  Rat   352 IEAHGSYFHMAAWGLPALKTIVVLTLRKVAGDELTGLCYVASMDPAALTGFVLVPLSCYLVLGTS 416

  Fly   441 FITRGMVMLFGLKHFANDIKSTSASN--KIHLIIMRMGVCALLTLVFILVAIACHVTEFRHADEW 503
            |:..|.|.||.::    .|..|..:|  |:..:::::||.::|..|.....|.|:|.|..:.|.|
  Rat   417 FLLTGFVALFHIR----KIMKTGGTNTEKLEKLMVKIGVFSILYTVPATCVIVCYVYERLNMDFW 477

  Fly   504 -AQSFRQFIICKISSVFEEKSSCRIE--NRPSVGVLQLHLLCLFSSGIVMSTWCWTPSSIETWKR 565
             .::..|  .|..::|...:..|.:.  :.|:|.|..|.:......||....|.|:..:.:||:.
  Rat   478 RLRATEQ--PCTAAAVPGGRRDCSLPGGSVPTVAVFMLKIFMSLVVGITSGVWVWSSKTFQTWQS 540

  Fly   566 --YIRKKCGKEVVEEVKMPKHKVIAQTWAKRKDFEDKGR--------LSITLYNTHTDP 614
              |.:...|:...:..:.|               ...||        .::.|:.|.|||
  Rat   541 LCYRKMAAGRARAKACRTP---------------GGYGRGTHCHYKAPTVVLHMTKTDP 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 33/163 (20%)
Frizzled 246..568 CDD:279827 87/334 (26%)
Fzd9NP_695217.1 CRD_FZ9 36..162 CDD:143572 24/123 (20%)
Required for Wnt-activated receptor activity. /evidence=ECO:0000269|PubMed:12138115 59..173 24/115 (21%)
7tmF_FZD9 222..543 CDD:320164 86/330 (26%)
TM helix 1 232..256 CDD:320164 7/23 (30%)
TM helix 2 265..286 CDD:320164 2/20 (10%)
TM helix 3 315..337 CDD:320164 9/21 (43%)
TM helix 4 358..374 CDD:320164 9/15 (60%)
TM helix 5 396..419 CDD:320164 6/22 (27%)
TM helix 6 450..472 CDD:320164 8/21 (38%)
TM helix 7 504..529 CDD:320164 6/24 (25%)
Lys-Thr-X-X-X-Trp motif, mediates interaction with the PDZ domain of Dvl family members. /evidence=ECO:0000250 533..538 0/4 (0%)
Required for CTNNB1 accumulation and TCF transcription factor activity. /evidence=ECO:0000269|PubMed:12138115 555..592 8/45 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D509772at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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