DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Mfrp

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_667337.1 Gene:Mfrp / 259172 MGIID:2385957 Length:584 Species:Mus musculus


Alignment Length:142 Identity:33/142 - (23%)
Similarity:49/142 - (34%) Gaps:21/142 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 GRDDKPWF---------DGLD--SRHIQCVRRARCYPTSNATNTCFGSKLPYELSSLD--LTDFH 118
            |..|..|.         |..|  |.|:.......|.|..  ...|.|  |.|..::..  .....
Mouse   437 GYRDLQWMCDLWKDCANDSNDNCSSHLSPQPDLTCEPVQ--VEMCLG--LSYNTTAFPNIWVGLA 497

  Fly   119 TEKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRILY 183
            |:.|:.|.|..|.:|..:| |:...|.|||.:..|:|..:.   .:..|...:|:...:.|:...
Mouse   498 TQTEVTDILRGYKSLTSLP-CYQTFQRFLCGLLVPRCTSLG---TILPPCRSVCQAAEQQCQSSL 558

  Fly   184 NTTFFPKFLRCN 195
            .....|....||
Mouse   559 ALLGTPWPFNCN 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 26/112 (23%)
7tmF_SMO_homolog 245..568 CDD:320158
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
MfrpNP_667337.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 108..140
CUB 150..258 CDD:238001
LDLa 266..300 CDD:238060
CUB 307..419 CDD:238001
CRD_FZ 470..584 CDD:143549 26/109 (24%)
Blue background indicates that the domain is not in the aligned region.

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