DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smo and cfz-2

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_503965.2 Gene:cfz-2 / 178768 WormBaseID:WBGene00000478 Length:578 Species:Caenorhabditis elegans


Alignment Length:581 Identity:131/581 - (22%)
Similarity:234/581 - (40%) Gaps:120/581 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 CFGSKLPYELSSLDLTDFH-TEKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDM 163
            |.|  :.|.::|...:..| .::|...:::.:|.|..| .|:..::.|||.::.|.|::  ..|.
 Worm    33 CKG--IGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEV-GCFQHLKFFLCTMYTPICQE--NYDK 92

  Fly   164 VYLPSYEMC---RITMEPCRILYNTTFFPKFLRCNETL------------------FPTKCTNGA 207
            ..||..|:|   |....|....|... :|:.|.| |.|                  .|.|...|.
 Worm    93 PILPCMELCVEARSKCSPIMAKYGFR-WPETLSC-EALPKMSDQMSTGNICAAPPDTPKKQHKGH 155

  Fly   208 RGMKFN---------------------------GTGQCL----SPLVPTDTSASYYPGIEGCGVR 241
            .....|                           |..:|.    .|.....:..|....:..|...
 Worm   156 HHKNQNQNQNQNHNYSPDGPEVGISKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAYS 220

  Fly   242 CKDPLYTDDEHRQIHKLIG-----WAGSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFLI 301
            |..|...:.     |.|:.     |:.:.|:|:: |...||.|: .:..:||...:|.:..|.|:
 Worm   221 CHSPALAES-----HSLVSNWMAFWSITCCVLAS-FTFLTFLIE-TDRFQYPERPIFMLAFCQLM 278

  Fly   302 ACVGWLLQFTSGSREDIVCRKDGTLRHSEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYAW-- 364
            ..||:::::..| .|:|.| ....::.::..:|.  .|.|:|:|.|:|..|..||:|.|:..|  
 Worm   279 VAVGFMIRYFVG-HEEIAC-DSMRIKGADDNSGS--LCFVVFLLTYFFGMAASVWWVILSLTWVL 339

  Fly   365 ----HWRAMGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVGICFVGYINHSMRAG 425
                .|.     .:.|.....:||:|.|.||.:.|:..:.|:.:||:.|.|||:||..:...:..
 Worm   340 SAASKWS-----PEAISSFSFHFHVVGWCLPAIQTVLVIVFNAIDGDPITGICYVGNTDLQFQRI 399

  Fly   426 LLLGPLCGVILIGGYFITRGMVMLFGLKHFANDIK----STSASNKIHLIIMRMGVCALLTLVFI 486
            .:|.||....::|..|:..|...|:.::   |:::    |..:::||..::.::|:.:||..:..
 Worm   400 FVLFPLLVYFIVGVLFLVIGFCNLWSIR---NEVQKQHPSLESAHKITQLMSKIGIFSLLYTIPS 461

  Fly   487 LVAIACHVTEFRHADEWAQSFRQFIICKISSVFEEKSSCRIENRPSVGVLQLHLLCL--FSSGIV 549
            |:.|.....|..|...|.||  |...|.......:.|..       :.:::...:|:  ::||. 
 Worm   462 LLIICVLFYEQNHRSLWEQS--QLCSCSPKQTIGDSSLI-------ISLIKTCCMCILGWTSGF- 516

  Fly   550 MSTWCWTPSSIETWKRYIRKKCGKEVVEEVKMPKHKVIAQTWAKRKDFEDKGRLSITLYNT 610
               |..:..::.:||..|   |.  :.....:||::.....:|| .|..     |...|||
 Worm   517 ---WVCSTKTLSSWKNAI---CC--LGSSRSLPKYQPADILYAK-SDMS-----SSQFYNT 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 34/173 (20%)
7tmF_SMO_homolog 245..568 CDD:320158 82/339 (24%)
TM helix 1 254..279 CDD:320158 8/29 (28%)
TM helix 2 289..310 CDD:320158 5/20 (25%)
TM helix 3 340..366 CDD:320158 11/31 (35%)
TM helix 4 382..398 CDD:320158 7/15 (47%)
TM helix 5 420..449 CDD:320158 6/28 (21%)
TM helix 6 471..498 CDD:320158 6/26 (23%)
TM helix 7 529..554 CDD:320158 3/26 (12%)
cfz-2NP_503965.2 CRD_FZ5_like 24..146 CDD:143565 28/119 (24%)
7tmF_FZD5_FZD8-like 223..532 CDD:320163 83/343 (24%)
TM helix 1 232..257 CDD:320163 7/25 (28%)
TM helix 2 266..287 CDD:320163 5/20 (25%)
TM helix 3 313..339 CDD:320163 11/25 (44%)
TM helix 4 356..372 CDD:320163 7/15 (47%)
TM helix 5 394..423 CDD:320163 6/28 (21%)
TM helix 6 446..473 CDD:320163 6/26 (23%)
TM helix 7 493..518 CDD:320163 4/35 (11%)

Return to query results.
Submit another query.