DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and mig-1

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_001021744.1 Gene:mig-1 / 171677 WormBaseID:WBGene00003238 Length:529 Species:Caenorhabditis elegans


Alignment Length:515 Identity:103/515 - (20%)
Similarity:191/515 - (37%) Gaps:133/515 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 GLDSRHIQCVRRARCYPTSNATNTCFGSKLPYELSSL-DLTDFHTEKELNDKLNDYYALKHVPKC 139
            |:|.:..|.|....|            :.|||.|:|. :|.|..:.|:.::.:..|..|..| .|
 Worm    20 GVDGQRCQKVDHEMC------------NDLPYNLTSFPNLVDEESWKDASESILTYKPLLSV-VC 71

  Fly   140 WAAIQPFLCAVFKPKC-EKINGEDMVYLPSYEMCRITMEPC-RILYNTTF-FPKFLRCNETLFPT 201
            ...::.|||:|:.|.| ||:...   ..|...:|....|.| .:|.:..| :|..:||::  ||.
 Worm    72 SEQLKFFLCSVYFPMCNEKLANP---IGPCRPLCLSVQEKCLPVLESFGFKWPDVIRCDK--FPL 131

  Fly   202 K------CTNG---------------ARGMKFNG--------------TGQCLSPLVPTDTSASY 231
            :      |..|               |:..:.:|              .|:|....|..:.|:. 
 Worm   132 ENNREKMCMKGPNEQGAIQDERAKFAAKESEDDGNDRVEDIQREVDRLNGKCPQDEVFLNRSSK- 195

  Fly   232 YPGIEGCGVRCKDPL---YTDDEH-RQIHKLIGWAGSICLLSNLFVV--STFFIDWKNANKYPAV 290
                  |...|.:|.   .||.|. .::...:..:..|..:.::|:|  |.:|...:..:.....
 Worm   196 ------CVPLCSNPQKVGQTDRESATRLLLFLSLSSVILTILSVFIVGLSIYFRRLEMLHSLTET 254

  Fly   291 IVFYINLCFLIACVGWLLQFTSGSREDIVCRK--------DGTLRHSEPTAGENLSCIVIFVLVY 347
            .:|:..:.|....|.:::..:...:..|.|..        .|.|.|        :.|..:..|:|
 Worm   255 AMFFSCISFCATSVIYIVSISFKDQFQISCTDYTHHLLFVVGGLSH--------VPCSSVASLIY 311

  Fly   348 YFLTAGMVWFVFLTYAWHWRA-MGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVG 411
            |..|...:|::.:..:|:... ..|:.|  |.:.....|:. .:||...:..:....|..|.:.|
 Worm   312 YTATCSRLWWLLICVSWNKATRTSHILD--DSRTRVIMLIL-GIPLAPLMLALLAKAVAANPLTG 373

  Fly   412 ICFVG-------YINHSMR-------AGLLLGPLCGVIL------IGGYFITRGMVM-------L 449
            :||:|       :|.:..|       :.:.|...|..:|      :.|:   .|::.       |
 Worm   374 LCFIGAASPGTDWIFNFCRELILFLISSIALSSACCRLLGSDEQDVNGF---AGVIAAVYPIAGL 435

  Fly   450 FGLKHFAND-----------IKSTSASNKIHLIIMRMGVCA--LLTLVFILVAIACHVTE 496
            |.:..|.||           ..:.||:.....:::...:||  |:.|:|.|...:..|::
 Worm   436 FYMLSFVNDATQPFLSLDRSFNAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVSK 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 38/173 (22%)
7tmF_SMO_homolog 245..568 CDD:320158 57/307 (19%)
TM helix 1 254..279 CDD:320158 4/26 (15%)
TM helix 2 289..310 CDD:320158 3/20 (15%)
TM helix 3 340..366 CDD:320158 6/25 (24%)
TM helix 4 382..398 CDD:320158 3/15 (20%)
TM helix 5 420..449 CDD:320158 6/48 (13%)
TM helix 6 471..498 CDD:320158 7/28 (25%)
TM helix 7 529..554 CDD:320158
mig-1NP_001021744.1 CRD_FZ 23..148 CDD:470581 36/142 (25%)
7tm_GPCRs 253..>414 CDD:475119 32/171 (19%)
TM helix 2 253..274 CDD:320089 3/20 (15%)
TM helix 3 304..326 CDD:320089 5/21 (24%)
TM helix 4 345..360 CDD:320089 3/15 (20%)
TM helix 5 382..414 CDD:320089 5/31 (16%)
Blue background indicates that the domain is not in the aligned region.

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