DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Fzd4

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_032081.3 Gene:Fzd4 / 14366 MGIID:108520 Length:537 Species:Mus musculus


Alignment Length:563 Identity:155/563 - (27%)
Similarity:242/563 - (42%) Gaps:114/563 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FDGLDSRHIQCVRRARCYPTS-NATNTCFGSKLP----YEL---SSLDLTDFHTEKELNDKLNDY 130
            |...:.|....:|.|.|.... |.|      |:|    :||   :.|.||.|       ..|..|
Mouse    37 FGDEEERRCDPIRIAMCQNLGYNVT------KMPNLVGHELQTDAELQLTTF-------TPLIQY 88

  Fly   131 YALKHVPKCWAAIQPFLCAVFKPKC-EKINGEDMVYLPSYEMCRITMEPCR-ILYNTTF-FPKFL 192
                   .|.:.:|.|||:|:.|.| ||||   :...|...||......|. :|....| :|..|
Mouse    89 -------GCSSQLQFFLCSVYVPMCTEKIN---IPIGPCGGMCLSVKRRCEPVLREFGFAWPDTL 143

  Fly   193 RCNETLFPTKCTNGARGMKFNGTGQCLSPLVPTDTSASYYPGIE------------------GCG 239
            .|::  ||.:  |....|...|.|   ...||........||.|                  .|.
Mouse   144 NCSK--FPPQ--NDHNHMCMEGPG---DEEVPLPHKTPIQPGEECHSVGSNSDQYIWVKRSLNCV 201

  Fly   240 VRC--KDPLYTDD--EHRQIHKLIGWAGSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFL 300
            ::|  ...||:..  |...|...: || |:|.:|..|.|.||.|| .:...||...:.::::|:.
Mouse   202 LKCGYDAGLYSRSAKEFTDIWMAV-WA-SLCFISTTFTVLTFLID-SSRFSYPERPIIFLSMCYN 263

  Fly   301 IACVGWLLQFTSGSREDIVCRKDGTLRHSEPT----AGENLSCIVIFVLVYYFLTAGMVWFVFLT 361
            |..:.::::.|.| ||.|.|..:   ..:||.    ..:|..|.:||:|:|:|..|..:|:|.||
Mouse   264 IYSIAYIVRLTVG-RERISCDFE---EAAEPVLIQEGLKNTGCAIIFLLMYFFGMASSIWWVILT 324

  Fly   362 YAWHWRA---MGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVGICFVGYINHSMR 423
            ..|...|   .||  :.|:...||||:.||::|.|.||..:....||.:.:.|:|:||..|....
Mouse   325 LTWFLAAGLKWGH--EAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADELTGLCYVGNQNLDAL 387

  Fly   424 AGLLLGPLCGVILIGGYFITRGMVMLFGLKHFANDIKSTSASNKIHLIIMRMGVCALLTLVFILV 488
            .|.::.||...::||..||..|:|.||.::  :|..|..:.::|:..:::::||.::|..|....
Mouse   388 TGFVVAPLFTYLVIGTLFIAAGLVALFKIR--SNLQKDGTKTDKLERLMVKIGVFSVLYTVPATC 450

  Fly   489 AIACHVTEFRHADEWAQSFRQFIICKISSVFEEKSSCRIENRPSVGVLQLHLLCLFSS---GIVM 550
            .|||:   |.....||       :.:.|:   :.|:..:|           :|.:|.|   ||..
Mouse   451 VIACY---FYEISNWA-------LFRYSA---DDSNMAVE-----------MLKIFMSLLVGITS 491

  Fly   551 STWCWTPSSIETWKRYIRKKCGKEVVEEVKMPKHKVIAQTWAK 593
            ..|.|:..::.||     :||...:|...|:.:.| ....|.|
Mouse   492 GMWIWSAKTLHTW-----QKCSNRLVNSGKVKREK-RGNGWVK 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 42/145 (29%)
Frizzled 246..568 CDD:279827 97/333 (29%)
Fzd4NP_032081.3 CRD_FZ4 42..167 CDD:143557 43/154 (28%)
Frizzled 210..509 CDD:279827 99/338 (29%)
Lys-Thr-X-X-X-Trp motif, mediates interaction with the PDZ domain of Dvl family members. /evidence=ECO:0000250 499..504 0/4 (0%)
PDZ-binding 535..537
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D509772at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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