DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Fzd1

DIOPT Version :9

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:NP_067432.2 Gene:Fzd1 / 14362 MGIID:1196625 Length:642 Species:Mus musculus


Alignment Length:647 Identity:156/647 - (24%)
Similarity:259/647 - (40%) Gaps:142/647 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 IMMFLEVAILCLWVVADASASSAKFG--STTPASAQQSDVELEPINGTLNYRLYAKKGRDDKPWF 74
            ::::|..|.|.|.|.|.|:...:..|  :..|...|||.   :..||                  
Mouse    56 LLLWLLEAPLLLGVRAQAAGQVSGPGQQAPPPPQPQQSG---QQYNG------------------ 99

  Fly    75 DGLDSRHIQCVRRARCYPTS--NATNTCFGSKLPYELSSLDLTDFHTEKE-LNDKLNDYYALKHV 136
                .|.|.......|.|.|  ..|:..:...:...|..      ||.:| ...:::.:|.|..|
Mouse   100 ----ERGISIPDHGYCQPISIPLCTDIAYNQTIMPNLLG------HTNQEDAGLEVHQFYPLVKV 154

  Fly   137 PKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNTTFF--PKFLRCNE--- 196
             :|.|.::.|||:::.|.|..:   :....|...:|....:.|..|.|...|  |..|:|.:   
Mouse   155 -QCSAELKFFLCSMYAPVCTVL---EQALPPCRSLCERARQGCEALMNKFGFQWPDTLKCEKFPV 215

  Fly   197 --------------------TLFPTKCTN-------GARGMKFNGTG-------QCLSPL-VPTD 226
                                :|.|...|:       |.||....|.|       .|...| ||:.
Mouse   216 HGAGELCVGQNTSDKGTPTPSLLPEFWTSNPQHGGGGYRGGYPGGAGTVERGKFSCPRALRVPSY 280

  Fly   227 TSASYYPGIEGCGVRCKDP------LYTDDEHRQIHKLIGWAGSICLLSNLFVVSTFFIDWKNAN 285
            .: .::.|.:.||..|:..      .:..:|.|.....||....:|..|.||.|.|:.:|.:..:
Mouse   281 LN-YHFLGEKDCGAPCEPTKVYGLMYFGPEELRFSRTWIGIWSVLCCASTLFTVLTYLVDMRRFS 344

  Fly   286 KYPAVIVFYINLCFLIACVGWLLQFTSGSREDIVCR----KDGTLRHSEPTAGENLSCIVIFVLV 346
             ||...:.:::.|:....|.::..|....|  :||.    :||....::.|..|  .|.::|:::
Mouse   345 -YPERPIIFLSGCYTAVAVAYIAGFLLEDR--VVCNDKFAEDGARTVAQGTKKE--GCTILFMML 404

  Fly   347 YYFLTAGMVWFVFLTYAWHWRA---MGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNS 408
            |:|..|..:|:|.|:..|...|   .||  :.|:....||||.||::|.:.|||.:|..:|||:.
Mouse   405 YFFSMASSIWWVILSLTWFLAAGMKWGH--EAIEANSQYFHLAAWAVPAIKTITILALGQVDGDV 467

  Fly   409 IVGICFVGYINHSMRAGLLLGPLCGVILIGGYFITRGMVMLFG----LKHFANDIKSTSASNKIH 469
            :.|:||||..|.....|.:|.||...:.||..|:..|.|.||.    :||      ..:.:.|:.
Mouse   468 LSGVCFVGLNNVDALRGFVLAPLFVYLFIGTSFLLAGFVSLFRIRTIMKH------DGTKTEKLE 526

  Fly   470 LIIMRMGVCALLTLVFILVAIACHVTEFRHADEW-----AQSFRQFIICKISSVFEEKSSC-RIE 528
            .:::|:||.::|..|...:.|||:..|....|:|     |||.:.:.|           .| .::
Mouse   527 KLMVRIGVFSVLYTVPATIVIACYFYEQAFRDQWERSWVAQSCKSYAI-----------PCPHLQ 580

  Fly   529 N----------RPSVGVLQLHLLCLFSSGIVMSTWCWTPSSIETWKRYIRK----KCGKEVV 576
            .          .|...|..:..|.....||....|.|:..::.:|:::..:    |.|:..|
Mouse   581 GGGGVPPHPPMSPDFTVFMIKYLMTLIVGITSGFWIWSGKTLNSWRKFYTRLTNSKQGETTV 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 36/176 (20%)
Frizzled 246..568 CDD:279827 94/348 (27%)
Fzd1NP_067432.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..45
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 76..99 5/25 (20%)
CRD_FZ1 107..233 CDD:143574 27/135 (20%)
7tmF_FZD1 294..641 CDD:320375 97/370 (26%)
TM helix 1 313..338 CDD:320375 8/24 (33%)
TM helix 2 347..368 CDD:320375 2/20 (10%)
TM helix 3 398..424 CDD:320375 8/25 (32%)
TM helix 4 441..457 CDD:320375 9/15 (60%)
TM helix 5 479..508 CDD:320375 9/28 (32%)
TM helix 6 528..555 CDD:320375 9/26 (35%)
TM helix 7 591..616 CDD:320375 5/24 (21%)
Lys-Thr-X-X-X-Trp motif, mediates interaction with the PDZ domain of Dvl family members. /evidence=ECO:0000250 620..625 0/4 (0%)
PDZ-binding 640..642 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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