DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and Corin

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:XP_061506966.1 Gene:Corin / 1277217 VectorBaseID:AGAMI1_007116 Length:1432 Species:Anopheles gambiae


Alignment Length:277 Identity:61/277 - (22%)
Similarity:94/277 - (33%) Gaps:70/277 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FPRMPNIMMFLEVAILCLWVVADASASSAKFG----STTPASAQQSDVELEPINGTLNYRLYAKK 66
            |...|.| .|:...|....|.|....|||..|    |:.|||.....|...|....|:   .|..
Mosquito   770 FNAYPTI-KFVNQTITRTAVPASQPGSSAVGGSGAVSSVPASGSGQSVAGSPGRTALD---VAGG 830

  Fly    67 GRDDKPWFDGLDSRHIQCVRRARCYPTSNATNTCFGSKLPYELSSL-DLTDFHTEKELNDKLNDY 130
            .|.|:....|:            |.|.  ....|...::||..:.. :......:.|...:::.:
Mosquito   831 FRGDRNPAPGV------------CLPV--IVKFCQQHRVPYNYTVFPNYIGHFGQPEAQIEIDLF 881

  Fly   131 YALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNT--TFFPKFLR 193
            .||..| :|:..:..|||::|.|||   ........|...:|..||..|...::.  ...|::||
Mosquito   882 EALVDV-QCYELVPLFLCSLFVPKC---GNSGATVPPCKSLCTETMRRCSFFFDVFGLELPEYLR 942

  Fly   194 CN-------------------ETLF----PTKCTNGARGMKFNGTGQCLSPLVPTDTSASYYPGI 235
            |:                   |::.    |..||......:     :|    :|.|.....:   
Mosquito   943 CSIFNDAVSDQEECVGMAEYKESIIRSRRPMACTGFLCDKR-----RC----IPNDWKCDGH--- 995

  Fly   236 EGCGVRCKDPLYTDDEH 252
                |.|:|  .||:.|
Mosquito   996 ----VDCQD--QTDEAH 1006

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 31/160 (19%)
7tmF_SMO_homolog 245..568 CDD:320158 3/8 (38%)
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
CorinXP_061506966.1 None
Blue background indicates that the domain is not in the aligned region.

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