DRSC/TRiP Functional Genomics Resources

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Protein Alignment smo and LOC1271960

DIOPT Version :10

Sequence 1:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster
Sequence 2:XP_061513840.1 Gene:LOC1271960 / 1271960 VectorBaseID:AGAMI1_011497 Length:1187 Species:Anopheles gambiae


Alignment Length:404 Identity:71/404 - (17%)
Similarity:110/404 - (27%) Gaps:179/404 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   685 RNSVDSQVSVKIAEMKTKVASRSRGKHGGSSSNRRTQRRRDYIAAATGKSSRRRESSTSVESQVI 749
            |.|.|.|          :...:.|..|   ..:||:|.:|.......||.:...|.....:...|
Mosquito    10 RRSTDEQ----------QQQQQQRHHH---HHHRRSQNQRQPARPTEGKPTPAGEQQAVSKVGAI 61

  Fly   750 ALKKTTYPNASHKVG----VFAHHSSKKQHNYTS------SMKRRTANAGLDPSILNEFLQKNGD 804
            ..|..:.|....:..    .|.||..::|.....      ..|.||          ||  ::.|.
Mosquito    62 VAKGRSKPAKGDEPDDWQYPFQHHQQQQQQQQQQRDEPVWGAKERT----------NE--REWGG 114

  Fly   805 FIFP---FLQNQDMSS----------SSEEDNSRAS----------QKIQDLNVVVKQQE----I 842
            |..|   :.::.|..|          |..:|:.|.|          .::|.     :||:    :
Mosquito   115 FKKPGPKYPESDDCDSLPPPPPPDDDSYFDDDDRLSHGHHHHHHHHHQLQQ-----QQQQHLAHL 174

  Fly   843 SEDDHDGIKIEELPNSKQVALENFLKNIKKSNESNSNRHSRNSARSQSKKSQKRH-----LKNPA 902
            ::..|:|:.:                         :.:..:...:.|.::.|.||     ...||
Mosquito   175 AQAHHNGMHL-------------------------ATQQQQQQQQQQQQQQQHRHHFGTGTPPPA 214

  Fly   903 ADLD----FRKDCVKYRSNDSLSCSSEELDVALDVGSLLNSSFSGISMGKPHSRNSKTSCDVGIQ 963
            .|.|    .:|| .|.|||...|.:               :|..|...|| |.            
Mosquito   215 LDSDLDASLKKD-RKLRSNSDSSNA---------------TSGGGGGAGK-HK------------ 250

  Fly   964 ANPFELVPSYGEDELQQAMRLLNAASRQRTEAANEDFGGTELQGLLGHSHRH------------- 1015
                                             |...||....|..||.|.|             
Mosquito   251 ---------------------------------NGGLGGKAANGGHGHHHHHHHHHHHSRGAMHA 282

  Fly  1016 ---QREPTFMSESD 1026
               :.|....|:||
Mosquito   283 KSSRAESVLSSDSD 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smoNP_523443.1 CRD_SMO 86..221 CDD:143560
7tmF_SMO_homolog 245..568 CDD:320158
TM helix 1 254..279 CDD:320158
TM helix 2 289..310 CDD:320158
TM helix 3 340..366 CDD:320158
TM helix 4 382..398 CDD:320158
TM helix 5 420..449 CDD:320158
TM helix 6 471..498 CDD:320158
TM helix 7 529..554 CDD:320158
LOC1271960XP_061513840.1 None
Blue background indicates that the domain is not in the aligned region.

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