DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and CHD1

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:NP_011091.1 Gene:CHD1 / 856911 SGDID:S000000966 Length:1468 Species:Saccharomyces cerevisiae


Alignment Length:1617 Identity:474/1617 - (29%)
Similarity:717/1617 - (44%) Gaps:317/1617 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1686 TDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEPDDSKKSDE-------DNKDKDK 1743
            :|..:.::..|.....:....:.:|.:.|....|.||.|:.:.:|.::.|:       .|:.|.|
Yeast    36 SDDEDDEDNIKQSRRKRMTTIEDDEDEFEDEEGEEDSGEDEDEEDFEEDDDYYGSPIKQNRSKPK 100

  Fly  1744 MEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSSTVLTADHAKEPETVLEKMEVDEKANDD 1808
            ...     ||..:|||:.|||              |.|||      |.|.....:.......|.|
Yeast   101 SRT-----KSKSKSKPKSQSE--------------KQSTV------KIPTRFSNRQNKTVNYNID 140

  Fly  1809 QSAVSKAEGSDE--KSTDDSNPEEATTEKNKESLEIEGEKE-----------RVKEGEESVKKEN 1860
            .|       .|:  :|.||...|||.:|:|........:.|           |:|...|..|.. 
Yeast   141 YS-------DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVL- 197

  Fly  1861 DEKTEADMENKPEPVFIDVEEYFVKYRNFSYLHCEWRTEEEL--LKGDRRVAAKIRRF-QQKQSQ 1922
             |||..|:.|..|..     |:.:|:.:.|:||..|.|.|.:  ::|.:|:....::| .:.|..
Yeast   198 -EKTVPDLNNCKENY-----EFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQV 256

  Fly  1923 QLNIFENIED------------EPFNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWKSLPYEDC 1975
            :|:.:...||            :.| ::|...:|::| |.......|.:...|||||:.|.|::.
Yeast   257 RLDPYVTAEDIEIMDMERERRLDEF-EEFHVPERIID-SQRASLEDGTSQLQYLVKWRRLNYDEA 319

  Fly  1976 TWELEEDVDNDKIEQYLRFNK------IPQRSEWKSKKRPHPELWKKLEKTPVYKGGNSLRPYQL 2034
            |||...|:.....||...|..      :||.|...:.:||.   ::||...|.:..|..||.:||
Yeast   320 TWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPR---FEKLSVQPPFIKGGELRDFQL 381

  Fly  2035 EGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVH-SVYEYGIRGPFLVIAPLSTIPNWQREFEG 2098
            .|:||:.|.|....|.|||||||||||:|::.|:. .::.....||.:::.||||:|.|...||.
Yeast   382 TGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEK 446

  Fly  2099 WT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVTDYMDLKAFNWRL 2162
            |. |:|.:.|.|:..|:..|::||:|  |......|:.:|||||:||:|.|:.|..:|.:..|:.
Yeast   447 WAPDLNCICYMGNQKSRDTIREYEFY--TNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQF 509

  Fly  2163 CVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEF 2227
            ..:||||||||....|.|.|....:.:|:|::||||||||.||.:|:|||.|.:|:..:|...|.
Yeast   510 MAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN 574

  Fly  2228 GSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFLKK 2292
            .....||.::.|...::|.:|||||.||||||..|.|.|:.|||:::|.:||:.||.:|:|.|..
Yeast   575 QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA 639

  Fly  2293 GTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDP---ESYYKNLILSAGKMVL 2354
            |....:. :|:|.|.||:|...||||.:.|||::...|    |:..   |:..:.||:|:|||||
Yeast   640 GAKGGHF-SLLNIMNELKKASNHPYLFDNAEERVLQKF----GDGKMTRENVLRGLIMSSGKMVL 699

  Fly  2355 IDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDR 2419
            :|:||.:||.:||||||||||||.||||.|||..:...|:|:||.:....|:.:||.::.|.|:.
Yeast   700 LDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND 764

  Fly  2420 FVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREM 2484
            |||||.|:||||||||..||||:|:|||||||.||||.||.|||||:..|.:|||:.::|.|.|:
Yeast   765 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEV 829

  Fly  2485 FDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGDKFCEEDIDS 2549
            .::|..|:.|:.|::....|.|:|.....:.:..|:..:||.||.......||. .|..:.::|.
Yeast   830 LERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQ-KKLEDLNLDD 893

  Fly  2550 ILKRRTQVITM----ESEKGSTFSKASFAASGNRSDITIDDPDFWTKWAKKVDIDPDACERDETE 2610
            :|......:|.    ||..|.......|..:..::||..|            ||.|:    :|.:
Yeast   894 VLNHAEDHVTTPDLGESHLGGEEFLKQFEVTDYKADIDWD------------DIIPE----EELK 942

  Fly  2611 DLVLSEPRRRTQIKRYGHEDVMELNSEESSNE-------------NSDEEGGIGLRSRRRKEKRD 2662
            .|...|.:|:.:  .|..|.:..:|..:::.:             |||.:.....||.||     
Yeast   943 KLQDEEQKRKDE--EYVKEQLEMMNRRDNALKKIKNSVNGDGTAANSDSDDDSTSRSSRR----- 1000

  Fly  2663 RAREKKGNDEYIPRERDALAALGLEEIQYGNWAKSECFKVEKGLLSFGWGRWSELL-ELGQFKRG 2726
            |||   .||         :.::|          :||...:.|.:|.|  |...|:| ||      
Yeast  1001 RAR---AND---------MDSIG----------ESEVRALYKAILKF--GNLKEILDEL------ 1035

  Fly  2727 WRDVDVEDCARIILLYCLQVYKGDEKIKTFIWDLITPTEDGEVQKISRD--HSGLHNLVPRGRNG 2789
                               :..|...:|:|  :....|.| |:.:.::|  |....|   |....
Yeast  1036 -------------------IADGTLPVKSF--EKYGETYD-EMMEAAKDCVHEEEKN---RKEIL 1075

  Fly  2790 GKSNKESTGVSTP-APGSASGSNSGNTTPAHKSSALDGSDKDSGGINASAVAAAVTSIHDPNHWS 2853
            .|..|.:|..... ..|.....|.....|..:.|.                             .
Yeast  1076 EKLEKHATAYRAKLKSGEIKAENQPKDNPLTRLSL-----------------------------K 1111

  Fly  2854 KKEKYDADAYLEGAYKKHLGRHANKVLLRVRMLYYIQHEVIGDFVQQIKDNTPISELPIRPPPTP 2918
            |:||.......:|.  |.|  :|..:|.||..|.|:::.:..::    ||: |:........|.|
Yeast  1112 KREKKAVLFNFKGV--KSL--NAESLLSRVEDLKYLKNLINSNY----KDD-PLKFSLGNNTPKP 1167

  Fly  2919 DQVPSSWWNPICCDKSLLVGTYKHGCEMYRQMRADPNLCFVTHVGAGAAGDDLAVTSL--PINED 2981
            .|..||.|... .|:.||:|.:|:|...:.|:|.||.|         ...|.:.:..:  |:.:.
Yeast  1168 VQNWSSNWTKE-EDEKLLIGVFKYGYGSWTQIRDDPFL---------GITDKIFLNEVHNPVAKK 1222

  Fly  2982 DANSKHDDGDEVDDDGTTTTKDSDSTKLTGGDNK-----------DSLLDPERPSSSGKSSSENA 3035
            .|:|          ..||.|.......:||...|           |.||...|...:.||.|  |
Yeast  1223 SASS----------SDTTPTPSKKGKGITGSSKKVPGAIHLGRRVDYLLSFLRGGLNTKSPS--A 1275

  Fly  3036 SGGNDKTESENDATTVSESSYKSEVLPGKGSDLDVSVAQQDALSATPEL-----ANTSDPKMNK- 3094
            ..|:.|..        :..|.|.:..|...|.           |.|||:     ||....|..| 
Yeast  1276 DIGSKKLP--------TGPSKKRQRKPANHSK-----------SMTPEITSSEPANGPPSKRMKA 1321

  Fly  3095 ---------NDAQVSASVSCDPADSSSPEAAGKAQGTGVQTGDAGELDIESEKKDNEKETKESTG 3150
                     |:.::|.:....|..|......|..|.:...:|.|.|.:.:|..:::.:.|..:..
Yeast  1322 LPKGPAALINNTRLSPNSPTPPLKSKVSRDNGTRQSSNPSSGSAHEKEYDSMDEEDCRHTMSAIR 1386

  Fly  3151 DAPAVEAKKDSAAIARAEGDKTESCTNNATTNISTTTTTTTITNTTTTTNNPSSKAA 3207
            .: ....::...::.|.|..|.            ..|..|||.|...:....|.||:
Yeast  1387 TS-LKRLRRGGKSLDRKEWAKI------------LKTELTTIGNHIESQKGSSRKAS 1430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 25/106 (24%)
HepA 1676..2527 CDD:223627 323/886 (36%)
SDA1 <1693..>1854 CDD:283052 41/180 (23%)
CHROMO <1879..1919 CDD:237991 11/42 (26%)
Chromo 1941..1996 CDD:278797 18/54 (33%)
DEXDc 2048..2197 CDD:238005 62/150 (41%)
Helicase_C 2350..2464 CDD:278689 72/113 (64%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
CHD1NP_011091.1 CD1_tandem_CHD1_yeast_like 175..247 CDD:349312 20/78 (26%)
CD2_tandem_ScCHD1_like 283..341 CDD:349311 19/58 (33%)
PLN03142 363..>961 CDD:215601 257/623 (41%)
Cdh1_DBD_1 1010..1129 CDD:408024 34/194 (18%)
SANT_TRF 1175..>1204 CDD:212558 11/29 (38%)
DUF4208 1368..1460 CDD:404744 13/76 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0384
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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