DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and RAD54

DIOPT Version :10

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:NP_188552.3 Gene:RAD54 / 821455 AraportID:AT3G19210 Length:910 Species:Arabidopsis thaliana


Alignment Length:996 Identity:236/996 - (23%)
Similarity:404/996 - (40%) Gaps:253/996 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1816 EGSDEKSTDDSNPEEATTEKNKESLEIEGEKERVKEGEE----SVKKENDEKTEADMENKPEPVF 1876
            |..||:....|:.::::.....:|.:.|||.:. .|.|:    |:..:.|.|:            
plant     2 EEEDEEILSSSDCDDSSDSYKDDSQDSEGENDN-PECEDLAVVSLSSDADRKS------------ 53

  Fly  1877 IDVEEYFVKYRNFSYLHCEWRTEEELLKGDRRVAAKIRRFQQKQSQQLNIFENIEDEPFNQDFTE 1941
                                :..::||:|:..|          |.|.|                 
plant    54 --------------------KNVKDLLRGNLVV----------QRQPL----------------- 71

  Fly  1942 VDRVLDMS--------------VHTDETSGETTKHYLVKWKSLPYEDCT---------WELEEDV 1983
            :.|||.:|              .|..:::|:.::....:.:.:|:...|         .|...::
plant    72 LPRVLSVSDGAAVCRKPFKPPCSHGYDSTGQLSRRLSARKRFVPWGSSTPVVVALPTKLEASTNI 136

  Fly  1984 DNDKIEQYLRFNKIPQRSE----WKSKKRPHPELWKKLEKTPVYKGGNSLRPYQLEGLNWLKFSW 2044
            :.|:.|:.:   .:|...|    |:|::.....:...:..:.:.|   .|||:|.||:.:: |..
plant   137 ERDEEEEVV---CLPPDIEPLVLWQSEEDGMSNVTTIMVHSVLVK---FLRPHQREGVQFM-FDC 194

  Fly  2045 Y-------NTHNCILADEMGLGKTIQSLTFVHSVYEYGIRG-PF----LVIAPLSTIPNWQREFE 2097
            .       |.:.|||||:||||||:||:|.::::...|..| |.    :::.|.|.:.||:.|.:
plant   195 VSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIK 259

  Fly  2098 GWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLI---TTFEMIVTDYMDLKAF 2158
            .|. |...::.....|...::...:.:.:..|.        ..|||   .||.|..:.:...::.
plant   260 KWVGDRIQLIALCESTRDDVLSGIDSFTRPRSA--------LQVLIISYETFRMHSSKFCQSESC 316

  Fly  2159 NWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEF 2223
            :..:|  ||||||||........|..|..:.||||||||:||::.|.|:::||..|........|
plant   317 DLLIC--DEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHF 379

  Fly  2224 MSEFGS--------LRTEEEVN-------KLQALLKPMMLRRLKDDVEKSLAPKEETIIEV---E 2270
            ...:.:        ..||||.|       :|.:.:...:|||....:...|.||   ||||   :
plant   380 RHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPK---IIEVVCCK 441

  Fly  2271 LTNIQKKYYRGILEQNFSFLKKG-TTSANIPNLMNTMMELRKCCIHPYLLN-----------GAE 2323
            :|.:|...|...:..  ..||:. ..:|....::..:..|:|.|.||.|:.           |.|
plant   442 MTTLQSTLYNHFISS--KNLKRALADNAKQTKVLAYITALKKLCNHPKLIYDTIKSGNPGTVGFE 504

  Fly  2324 EQIQY----DFKSQHG--EDPESYYKNLILSAGKMVLIDKLLPKL-KANGHRVLIFSQMVRCLDI 2381
            ..:::    .|..:.|  ...:..:..|   :|||.::.:||..| :....|:::.|...:.||:
plant   505 NCLEFFPAEMFSGRSGAWTGGDGAWVEL---SGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDL 566

  Fly  2382 LEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDS 2446
            .......|:|||.|:||....:.||:.::|.:.|..|.|.|||.:||||.|:||..|:.::::|.
plant   567 FAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDP 631

  Fly  2447 DWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQGSKDGN 2511
            ||||.||.||.||..|.||:|.|.:||.|...|.|.:::.:...|.||.|.:........::.||
plant   632 DWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTDNSTRQGN 696

  Fly  2512 NKQLSKKEIEDLLKKGAYGAVM-------------------------DDDNAGDKFC---EEDID 2548
              .||.:::.||.  ..:|.|.                         :::|..|..|   :|||.
plant   697 --LLSTEDLRDLF--SFHGDVRSEIHEKMSCSRCQNDASGTENIEEGNENNVDDNACQIDQEDIG 757

  Fly  2549 SILK----------RRTQVIT-MESEKGS---TFSKASF------AASG---------------- 2577
            ...|          ...||.| :|.:.||   .|:..|.      |::|                
plant   758 GFAKDAGCFNLLKNSERQVGTPLEEDLGSWGHHFTSKSVPDAILQASAGDEVTFVFTNQVDGKLV 822

  Fly  2578 ----NRSDITIDDPDFWTKWA--KKVDIDPDACERDETEDLVLSEPRRRTQIKRY----GHEDV- 2631
                |.|..|::..:......  |:....|....|:..:.|.|:|..:|.::..|    |:.:: 
plant   823 PIESNVSPKTVESEEHNRNQPVNKRAFNKPQQRPREPLQPLSLNETTKRVKLSTYKRLHGNSNID 887

  Fly  2632 -----MELNSEESSNENSDEE 2647
                 |.|......:.|.|::
plant   888 DAQIKMSLQRPNLVSVNHDDD 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 Atrophin-1 221..>533 CDD:460830
Med15 <1056..>1265 CDD:312941
PRK12678 1319..>1500 CDD:237171
PTZ00121 <1419..1923 CDD:173412 18/110 (16%)
CD1_tandem_CHD5-9_like 1851..1918 CDD:349315 9/70 (13%)
CD2_tandem_CHD5-9_like 1937..1995 CDD:349310 11/80 (14%)
PLN03142 2029..>2606 CDD:215601 189/699 (27%)
PTZ00341 <3662..3887 CDD:173534
BRK 4568..4611 CDD:462196
RAD54NP_188552.3 HepA <180..679 CDD:440319 156/517 (30%)
DEXHc_RAD54 180..421 CDD:350762 74/251 (29%)
Blue background indicates that the domain is not in the aligned region.

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