DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and rad54b

DIOPT Version :10

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:XP_688979.4 Gene:rad54b / 560482 ZFINID:ZDB-GENE-060810-50 Length:917 Species:Danio rerio


Alignment Length:547 Identity:163/547 - (29%)
Similarity:270/547 - (49%) Gaps:81/547 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  2027 NSLRPYQLEGLNWLKFSWYNTHNC------------ILADEMGLGKTIQSLTFVHSVYEYGIRGP 2079
            |.|||:|.||:.:|       :.|            |||||||||||:|.:..:.::..   :||
Zfish   306 NHLRPHQKEGVVFL-------YECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLR---QGP 360

  Fly  2080 F---------LVIAPLSTIPNWQREFEGWTDM-NVVVYHGSVTSKQMIQDYEYYYKTESGKVLKE 2134
            :         ||:.|.|.:.||..||..|... .:.||  :|.....::|:           :..
Zfish   361 YGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVY--TVDQDHRVEDF-----------VSS 412

  Fly  2135 PIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQ 2199
            |: .:||:.::||::.....||..::.:.:.||.|||||.|.|....|..|:...|::|:|||:|
Zfish   413 PL-CSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQ 476

  Fly  2200 NNISELFSLLNFLEPSQFSSQEEF--MSEFGSLRT-------------EEEVNKLQALLKPMMLR 2249
            |::.|.:|::.|:.|....:...:  :.|...||:             ||...:|..|.....||
Zfish   477 NDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTGVFTLR 541

  Fly  2250 RLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQN--FSFLKKGTTSANIPNLMNTMMELRKC 2312
            |.::.:.:.|:.:.|..:..:.|.:|.:.||.:|...  .:.|....|..:.|:|: .:..|:|.
Zfish   542 RTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACLSGSHTYTHSPHLV-CINALKKL 605

  Fly  2313 CIHPYLL-NGAEEQIQYDFKSQHGE-DPESYYKNLILSA--GKMVLIDKLLPKLKANGH-----R 2368
            |.||.|| |..:|:....::.:..| .||.|......:|  ||::::..||..::   |     |
Zfish   606 CNHPALLYNTLQEKADEMYEGEVKELFPEEYSTGAFSTADSGKLLVLTDLLSAIQ---HVNRTDR 667

  Fly  2369 VLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGI 2433
            |::.|...:.||:|:|......|.:.|:||:.....||:.:|.::.|.|..|:.||.:||||:|:
Zfish   668 VVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGL 732

  Fly  2434 NLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAV 2498
            ||..|..:::||.||||.||:||.||..|.||:|.|.|||.|...:.|.:::.:...|.||...|
Zfish   733 NLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTV 797

  Fly  2499 LQSMNTQGSKDGNNKQLSKKEIEDLLK 2525
            :..     :|...:...|.:|:.||.:
Zfish   798 VDL-----TKKAEHISFSAEELRDLFR 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 Atrophin-1 221..>533 CDD:460830
Med15 <1056..>1265 CDD:312941
PRK12678 1319..>1500 CDD:237171
PTZ00121 <1419..1923 CDD:173412
CD1_tandem_CHD5-9_like 1851..1918 CDD:349315
CD2_tandem_CHD5-9_like 1937..1995 CDD:349310
PLN03142 2029..>2606 CDD:215601 162/545 (30%)
PTZ00341 <3662..3887 CDD:173534
BRK 4568..4611 CDD:462196
rad54bXP_688979.4 HepA <308..799 CDD:440319 157/518 (30%)
DEAD-like_helicase_N 308..542 CDD:475120 72/257 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.