DRSC/TRiP Functional Genomics Resources

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Protein Alignment kis and chd4a

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:XP_021323760.1 Gene:chd4a / 558344 ZFINID:ZDB-GENE-041111-187 Length:1931 Species:Danio rerio


Alignment Length:2308 Identity:602/2308 - (26%)
Similarity:883/2308 - (38%) Gaps:736/2308 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1325 PKAKKPKDPNDPNSTETPAAVKKRAGASKRRKQYGEDGAEQTGEGSEVEDNKPLVPKAGSADGEA 1389
            ||.||.|... .:|.|:..:.:.|:    ||::.|....|                         
Zfish    33 PKVKKKKKAK-KSSRESKGSKRNRS----RREEIGISSPE------------------------- 67

  Fly  1390 ETTSGGTGVDGESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPASTPSRRDRKR-S 1453
                     .||.||.||         ..||..|:|..|              .||.|:.:|| |
Zfish    68 ---------PGEGPDLDD---------GEEDRSESEGSD--------------YTPGRKKKKRAS 100

  Fly  1454 TAR-SRRNANSEEGGSARKNRGSLSAKALKKRRNRGRIVPESDGEDDTLDRTPPPSPPPDSEMDS 1517
            ||: .:||:::.|..|           |..|||.     ||.:.::|              :.||
Zfish   101 TAKDKKRNSSAAERNS-----------AASKRRE-----PEEEEDED--------------DDDS 135

  Fly  1518 NKRRSSR--NTQRKKYIDDVMLRFSDDENSLLV--------ASPVKKDKKPSANASNSN--AGSD 1570
            ..:.||:  :|...:.||.:   |::::...|.        ..|:...|.|....|...  .|:.
Zfish   136 EPKSSSQLLDTWGMEDIDHI---FTEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAK 197

  Fly  1571 VEKTEPQSGAEGDAAQEVGEEKSNLPLD-----ESSQLEASSSTSAVAEKERQISTDAANAAMSS 1630
            ..:....:...|.|...|.......|.:     .::|:...|:.:|...|.:.......||...|
Zfish   198 WREFSTNNPLRGSATSLVAAASVETPPETPTSASAAQISPESTPAAPVRKAKTKEGKGPNARKKS 262

  Fly  1631 KPNYVYINTGDEDSMVVQLVLAMRMGKRELILDKPKEK-------AP--------EPKQDEEKSE 1680
            ||                             ..||:||       ||        ..|:....||
Zfish   263 KP-----------------------------APKPQEKKVKTKKVAPLKIKLGGFNSKRKRSSSE 298

  Fly  1681 LDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEPDDSKKSDEDNKDKDKME 1745
            .|:...|....|....:...|    ..|......|||.:...|:      :||:|||.   |..|
Zfish   299 EDDVDVDSDFDDGSINSVSVS----NGSNSRSSRSSAKKKPKKK------TKKADEDG---DGYE 350

  Fly  1746 VDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSSTVLTADHAKEPETV-----LEKMEVDEKA 1805
            .|.:    |.....::..|.:..:...:|..    ...|..|..|.||..     .|||.:..:|
Zfish   351 TDHQ----DYCEVCQQGGEIILCDTCPRAYH----MVCLDPDMEKAPEGTWSCPHCEKMGIQWEA 407

  Fly  1806 NDDQS-AVSKAEGSDEKSTDDSNPEEATTEKNKESL----------------------------- 1840
            .:|.| .....|...|...||.:.|.....|:...|                             
Zfish   408 REDASEGEEDNEAGGEAEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWIC 472

  Fly  1841 ------EIEGEKERV-------KEGEESVKKENDEKTEA----DMENKPEPVFIDVEEYFVKYRN 1888
                  .::|:.:::       ......|.:.:|..|:|    .:..:||      .|:|||::|
Zfish   473 PRCTCPSMKGKVQKILTWRWTEPPPPTPVPRPSDLPTDAPDPTPLAGRPE------REFFVKWQN 531

  Fly  1889 FSYLHCEWRTEEELLKGDRRVAAKIRRFQQKQSQQLNIFENIEDEP------------------- 1934
            .||.||.|.||.:|   :.......|.:|:|         |..|||                   
Zfish   532 MSYWHCSWVTELQL---EIHCQVMFRNYQRK---------NDMDEPPPIDFGGEGEEEKSDKRKK 584

  Fly  1935 ----------------FNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWKSLPYEDCTWELEE-- 1981
                            ...::..:.|:|:.||     ..:...|||:||:.|.|:..|||||:  
Zfish   585 KDPTYARMEEKYYRFGIKMEWMVIHRILNHSV-----DKKNNCHYLIKWRDLTYDQATWELEDMD 644

  Fly  1982 --DVDNDKIEQYLRFNKIPQRSEWKSKKR----------------PHPELWKKLEKTPVY--KGG 2026
              |.|..|: ||....::....|.|..|:                |..:...|.|:.|.|  ..|
Zfish   645 LPDYDTYKL-QYWNHRELMMGDEGKPGKKIKIKGKMRKLDRPPENPVVDPTIKFERQPDYLDTTG 708

  Fly  2027 NSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYG-IRGPFLVIAPLSTIP 2090
            .:|.||||||||||:|||....:.|||||||||||:|:..|::|:|:.| .:|||||.||||||.
Zfish   709 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTII 773

  Fly  2091 NWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEP--------IKFNVLITTFE 2146
            ||:||||.|. ||.||.|.|...|:.:|::.|:.::..:.:..|:|        :||:||:|::|
Zfish   774 NWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKPSKMKKEASVKFHVLLTSYE 838

  Fly  2147 MIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNF 2211
            :|..|...|.:.:|...|:||||||||...|....|....|:|::||:|||||||:.|||.||||
Zfish   839 LITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELFHLLNF 903

  Fly  2212 LEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQK 2276
            |.|.:||:.|.|:.||..:..|:::.||..:|.|.||||||.||.|.:..|.|.|:.|||:.:||
Zfish   904 LTPERFSNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQK 968

  Fly  2277 KYYRGILEQNFSFLK-KGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPES 2340
            |||:.||.:||..|. :|  ..|..:|:|.:|:|:|||.||||...|        ..:..:.|..
Zfish   969 KYYKFILTRNFEALNTRG--GGNQVSLLNVVMDLKKCCNHPYLFPAA--------AMEAAKMPNG 1023

  Fly  2341 YYK--NLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGN 2403
            .|:  .|..|:||::|:.|:|.|||..||||||||||.:.||:|||:|....|.:|||||.|.|.
Zfish  1024 MYEGGGLTKSSGKLLLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGG 1088

  Fly  2404 LRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKM 2468
            :|||||||::.||:.:|||||.|:||||||||..||||:||||||||.||:||.:|.|||||.|.
Zfish  1089 MRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKK 1153

  Fly  2469 VKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVM 2533
            |.|||.:.:.:.|..:...|..|:.|...|::.  ..|||.|:   :||:|::|:||.|......
Zfish  1154 VMIYRFVTKASVEERITQVAKKKMMLTHLVVRP--GLGSKTGS---MSKQELDDILKFGTEELFK 1213

  Fly  2534 DDDNAGDKFCEED----------IDSILKRR------TQVITMESEKGSTFSKASFAASGN---- 2578
            |:....:|..:||          ||.:|.|.      |::.:| :|..|:|..|.:.....    
Zfish  1214 DEGEGENKEGQEDSSVIHYDDKAIDRLLDRNQDATDDTELQSM-NEYLSSFKVAQYVVKDEEEAE 1277

  Fly  2579 --------RSDITIDDPDFWTKWAKKVDIDPDACERDETEDLVLSEPRRRTQIKRYGHEDVMELN 2635
                    :.:.:: |||:|.|..:.       ....:.|||..:..:.:...|:..:.|    .
Zfish  1278 EEVQREIIKQEESV-DPDYWEKLLRH-------HYEQQQEDLARNLGKGKRIRKQVNYND----G 1330

  Fly  2636 SEES---SNENSDEEGGIGLRSRRRKE---KRDRAREKKGNDEYIPRERDALAALGLEEIQYGNW 2694
            |:|.   .::.||.:....:.|....|   :|..|..::.|.:.:..::|               
Zfish  1331 SQEDRDWQDDQSDGQSDYSVASEEGDEDFDERSEANSRRPNRKGLRNDKD--------------- 1380

  Fly  2695 AKSECFKVEKGLLSFGWGRWSELLELGQFKRGWRDVDVEDCARIILLYCLQVYKGDEKIKTFIWD 2759
                  |....||:    |.|..:|:..|....|                         |.|:..
Zfish  1381 ------KPLPPLLA----RVSGNIEVLGFNARQR-------------------------KAFLNA 1410

  Fly  2760 LI---TPTEDG-EVQKISRDHSGLHNLVPRGRNGGKSNKESTGVST------PAPGSASGSNSGN 2814
            ::   .|.:|. ..|.:.||..            |||.:|.....:      ..||:        
Zfish  1411 VMRYGMPPQDAFTTQWLVRDLR------------GKSEREFKAYVSLFMRHLCEPGA-------- 1455

  Fly  2815 TTPAHKSSALDGSDKDSGGINASAVAAAVTSIHDPNHWSKKEKYDADAYLEGAYKKHLGRHANKV 2879
                      ||::..:.|:              |.              ||..::|       |
Zfish  1456 ----------DGAESFADGV--------------PR--------------EGLSRQH-------V 1475

  Fly  2880 LLRVRMLYYIQHEVIGDF-----------VQQIKDNTPIS------ELPIRPP------------ 2915
            |.|:.::..|:.:| .:|           :.::.:|...|      :.|.:.|            
Zfish  1476 LTRIGVMSLIRKKV-QEFEHVNGQWSMPWMMELSENKTTSTAGSHPDSPSKTPTTGTPSDTQPNT 1539

  Fly  2916 PTPDQVPSSWWNPICCDKSLLVGTYKHGCEMYRQMRADPNLCFVTHVGAGAAGDDLAVTSLPINE 2980
            |.||.||.                                        |..||.|.....:...:
Zfish  1540 PAPDGVPK----------------------------------------AEDAGKDADKEKVKNGD 1564

  Fly  2981 DDANSKHDDGDEV----DDDGTTTTKDSDSTKLTGGDNKDSLLDPERPSSSGKSSSENASGGNDK 3041
            .:..:..:...||    |:||...:...:..|  |.:.|:     :.|.||  |.:|.|.|..::
Zfish  1565 GEKEANENKNSEVIAVPDEDGRAASASEEKEK--GKEEKE-----KTPESS--SEAEKADGKQEE 1620

  Fly  3042 TESENDATTVSESSYKSEVLPGKGSDLDVSVAQQDALSATPELANTSDPKMNKNDAQVSASVSCD 3106
            .|.||..:..||........| |||:.|               ..|||.|..|.|          
Zfish  1621 KEEENAKSGDSEEKTDDTDKP-KGSEAD---------------KETSDAKGEKKD---------- 1659

  Fly  3107 PADSSSPEAAGKAQGTGVQTGDAGELDIESEKKDNEKETKESTGDAPAVEAKKDSAAIAR----- 3166
                ..||   |...|.|.....|:.|    :||:.|  .|..|..|..|:.|||||.|.     
Zfish  1660 ----DEPE---KMDTTPVTDEKKGQKD----EKDSGK--TEEAGKLPNGESAKDSAAGAGIEERK 1711

  Fly  3167 ----------AEGDKTESCTNNATTNISTTTTTTTITNTT------------------------- 3196
                      |:|..||  .::...|.....|.|..||..                         
Zfish  1712 KAKTRFMFNIADGGFTE--LHSLWQNEERAATVTKKTNEIWHRRHDYWLLAGIIQHGYARWQDIQ 1774

  Fly  3197 -----TTTNNPSSKAANSNNTTDHANS---------NSHLGLDEEESVAGSYPPTVAAVEDATTM 3247
                 ...|.|.....|..|..:..|.         ...|.::|:...|.....|    ||.:  
Zfish  1775 NDVRFAILNEPFKGEINRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMT----EDPS-- 1833

  Fly  3248 WPSMQDLNTRLRRV---ITAYQRNYKK-------------------EELKLQQKA---KLQALVS 3287
            .|||. ||||...|   ..::|...|:                   |||....||   :|.|.::
Zfish  1834 HPSMA-LNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIA 1897

  Fly  3288 STPPLSV--------------PTTPTLQSMQMQ 3306
            ..||::|              ...|..||.|:|
Zfish  1898 RIPPVAVRLQMSERNILSRLASRGPDTQSQQVQ 1930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 47/253 (19%)
HepA 1676..2527 CDD:223627 348/972 (36%)
SDA1 <1693..>1854 CDD:283052 36/208 (17%)
CHROMO <1879..1919 CDD:237991 15/39 (38%)
Chromo 1941..1996 CDD:278797 21/58 (36%)
DEXDc 2048..2197 CDD:238005 71/158 (45%)
Helicase_C 2350..2464 CDD:278689 74/113 (65%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
chd4aXP_021323760.1 CHDNT 153..206 CDD:311840 8/55 (15%)
OxoGdeHyase_C 196..>280 CDD:330401 17/112 (15%)
PHD1_CHD_II 356..398 CDD:277006 7/45 (16%)
PHD2_CHD_II 433..475 CDD:277007 2/41 (5%)
CHROMO <522..559 CDD:237991 16/45 (36%)
Chromo 607..659 CDD:306815 21/57 (37%)
SNF2_N 709..>1250 CDD:331286 260/555 (47%)
DUF1087 1280..1334 CDD:310812 11/65 (17%)
DUF1086 1368..1502 CDD:310809 36/249 (14%)
Neuromodulin_N <1547..>1713 CDD:331332 55/253 (22%)
CHDCT2 1747..1917 CDD:311841 32/176 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D54215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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