DRSC/TRiP Functional Genomics Resources

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Protein Alignment kis and rad54l

DIOPT Version :10

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:NP_001001241.1 Gene:rad54l / 407922 XenbaseID:XB-GENE-979988 Length:742 Species:Xenopus tropicalis


Alignment Length:565 Identity:162/565 - (28%)
Similarity:271/565 - (47%) Gaps:69/565 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  2018 EKTPVYKG-----GNSLRPYQLEGLNWLKFSW--------YNTHNCILADEMGLGKTIQSLTFVH 2069
            ||.||:..     |..|||:|.||   :||.|        ..:|..|:|||||||||:|.:|.:.
 Frog   135 EKVPVHVVVDPVLGKVLRPHQREG---VKFLWECVTGRRISGSHGSIMADEMGLGKTLQCITLIW 196

  Fly  2070 SVYEYGIRGP--------FLVIAPLSTIPNWQREFEGWTDMNVVVYHGSVTSKQMIQDYEYYYKT 2126
            ::..   :.|        .:|:.|.|.:.||..|...|....:........||:.|......:..
 Frog   197 TLLR---QSPDAKPEIEKAVVVCPSSLVKNWYNEVSKWLGGRIQPLAIDGGSKEEIDKKLSGFMN 258

  Fly  2127 ESGKVLKEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRV 2191
            :.|  ::.|..  :||.::|........|...:..|.:.||.|||||...:..:.|..||...||
 Frog   259 QHG--MRVPSA--ILIISYETFRLHAEVLHRGSVGLVICDEGHRLKNSENQTYQALNSLNTVRRV 319

  Fly  2192 LLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEF---------------GSLRTEEEVNKLQA 2241
            |:||||:||::.|.|||::|:......:.:||...|               ...:.||::.:|..
 Frog   320 LISGTPIQNDLLEYFSLVHFVNAGILGTAQEFKKRFEIPILKGRDADASAADRQKGEEKLKELIG 384

  Fly  2242 LLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQ--NFSFLKKGTTSANIPNLMN 2304
            ::...::||..|.:.|.|..|.|.::...||.:|.:.|:..|:|  ....|.:|..|.   :.::
 Frog   385 VVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQSELYKLFLKQAKPAEDLNEGKISV---SSLS 446

  Fly  2305 TMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYKNLI---LSAGKMVLIDKLLPKLKA-N 2365
            ::..|:|.|.||.|:.....:.:..|:......|..|....:   || |||:::|.:|...:: :
 Frog   447 SITSLKKLCNHPSLIYEKCVEEEEGFQGALNLFPSGYSTKSVEPQLS-GKMLVLDYILAVTRSTS 510

  Fly  2366 GHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGG 2430
            ..:|::.|...:.||:.|.....|:|.:.|:||.:....|.:.::|::.|.|..|:|:|.:||||
 Frog   511 SDKVVLVSNYTQTLDLFEKLCRTRRYLYVRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGG 575

  Fly  2431 LGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLD 2495
            .|:||..|:.::::|.||||.||.||.||..|.||:|...|||||...|.|.::|.:.:.|..|.
 Frog   576 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCFIYRLLSTGTIEEKIFQRQTHKKALS 640

  Fly  2496 KAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGD 2540
            ..|:.      .:....:..|..|:::|.       :::::...|
 Frog   641 SCVVD------EEQDVERHFSIGELKELF-------ILNENTTSD 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 Atrophin-1 221..>533 CDD:460830
Med15 <1056..>1265 CDD:312941
PRK12678 1319..>1500 CDD:237171
PTZ00121 <1419..1923 CDD:173412
CD1_tandem_CHD5-9_like 1851..1918 CDD:349315
CD2_tandem_CHD5-9_like 1937..1995 CDD:349310
PLN03142 2029..>2606 CDD:215601 157/549 (29%)
PTZ00341 <3662..3887 CDD:173534
BRK 4568..4611 CDD:462196
rad54lNP_001001241.1 Rad54_N <74..>121 CDD:430137
HepA <147..645 CDD:440319 154/511 (30%)
DEXHc_RAD54A 151..393 CDD:350825 70/251 (28%)
Blue background indicates that the domain is not in the aligned region.

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