DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and Chd3

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster


Alignment Length:925 Identity:321/925 - (34%)
Similarity:498/925 - (53%) Gaps:121/925 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly  1786 ADHAKEPETVLEKMEVDEKANDDQSAVSKAEGSDEKSTDD----------SNPEEATTEKN---K 1837
            |...|.|:|..:|    :|..|::.....::|.|....|.          |.|.::..:.:   .
  Fly    17 ASKDKRPKTNAKK----QKFRDEEYCKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICP 77

  Fly  1838 ESLEIEGEKERVKEGEESVKKENDEKTEADMENKPEPVFIDVEEYFVKYRNFSYLHCEWRTEEEL 1902
            ..:.:.|:.|::.....::.:..:.:|....:.:         |||:|:...||.||||..|.::
  Fly    78 RCIPLPGKAEKILSWRWALDRSVELRTSKGEKRR---------EYFIKWHGMSYWHCEWIPEGQM 133

  Fly  1903 LKGDRRVAAKIRRFQQKQSQQLNIFENIEDEPFN-----------QDFTEVDRVLDMSVHTDETS 1956
            |   ...|:.:..||::...:....|.::|:..|           .::..|.||::   |::|.:
  Fly   134 L---LHHASMVASFQRRSDMEEPSLEELDDQDGNLHERFYRYGIKPEWLLVQRVIN---HSEEPN 192

  Fly  1957 GETTKHYLVKWKSLPYEDCTWELEEDVDNDKIEQYLRFNKIPQRSEWKSKKRPHP--ELWKKLEK 2019
            |.|.  |||||:.|.|.|.:||.|.|......:....:.|:...::.:.:.||.|  :|.||.|.
  Fly   193 GGTM--YLVKWRELSYNDSSWERESDSIPGLNQAIALYKKLRSSNKGRQRDRPAPTIDLNKKYED 255

  Fly  2020 TPVY--KGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYG-IRGPFL 2081
            .||:  :.|..|.|:|:||::||::||......|||||||||||||::.|::|:::.| .|||||
  Fly   256 QPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFL 320

  Fly  2082 VIAPLSTIPNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKE---PIKFNVLI 2142
            :..||||:.||:||.|.|. ::..|.|.|..|::.:|:.:|..::..:.|.::|   ..||||::
  Fly   321 ISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVML 385

  Fly  2143 TTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFS 2207
            |::|.|..|...|...:|...|:||||||::...|....|.:..:.:::||:|||||||:.|||.
  Fly   386 TSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFH 450

  Fly  2208 LLNFLEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELT 2272
            |||||...:|:..:.|.:||..:..||:|.:|..:|:|.||||||.||.||:.||.|.|:.|||:
  Fly   451 LLNFLSSGKFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELS 515

  Fly  2273 NIQKKYYRGILEQNFSFL-KKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGE 2336
            ::|||:|:.||.:||..| :||  ...:.:|:|.||:|||||.||||...|.|:...        
  Fly   516 SMQKKFYKHILTKNFKALNQKG--GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATI-------- 570

  Fly  2337 DPESYYK--NLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGR 2399
            .|...|:  :|..::||:.|:.|:|.:|||:.||||:||||.:.|::||.:|....|.::||||.
  Fly   571 SPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGS 635

  Fly  2400 IRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIG 2464
            |:|:|||:||||::.|.|:.|||||.|:||||||||..||||||:||||||.||:||.:|.||:|
  Fly   636 IKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMG 700

  Fly  2465 QRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQ----SMNTQGSKDGNNKQLSKKEIEDLLK 2525
            |:|.|.|||.:..|:.|..:...|..|:.|...|::    .|.|..|||         |:||:|:
  Fly   701 QKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKD---------ELEDILR 756

  Fly  2526 KGAYGAVMDDDNAGDKFCEEDIDSILKRRTQVI----TMESEKGSTFSKASFAASGN-------R 2579
            .|......|..:....:.::.:..:|.|..:.|    :..:|..|:|..||:|...:       .
  Fly   757 FGTEDLFKDGKSEAIHYDDKAVADLLDRTNRGIEEKESWANEYLSSFKVASYATKEDHEEHDDYN 821

  Fly  2580 SDITIDDPDFWTKWAKKVDIDPDACERDETEDLVLSEPRRRTQIKRYGHEDVMELNSEESSNENS 2644
            :|....||.:|.....|                  |:|:...:.|:            :|.....
  Fly   822 NDAENTDPFYWENLMGK------------------SQPKLPKKQKK------------QSQQSQV 856

  Fly  2645 DEEGGIGLRSRRRKE 2659
            |.|..:|...|.|||
  Fly   857 DVESIMGKGKRIRKE 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 321/925 (35%)
HepA 1676..2527 CDD:223627 294/780 (38%)
SDA1 <1693..>1854 CDD:283052 14/80 (18%)
CHROMO <1879..1919 CDD:237991 15/39 (38%)
Chromo 1941..1996 CDD:278797 19/54 (35%)
DEXDc 2048..2197 CDD:238005 61/153 (40%)
Helicase_C 2350..2464 CDD:278689 69/113 (61%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007 5/41 (12%)
CHROMO 85..147 CDD:237991 17/73 (23%)
CHROMO 181..233 CDD:214605 20/56 (36%)
SNF2_N 270..561 CDD:278600 132/292 (45%)
DEXDc 288..440 CDD:238005 61/151 (40%)
Helicase_C 585..700 CDD:278689 69/114 (61%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467117
Domainoid 1 1.000 152 1.000 Domainoid score I1379
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D54215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45623
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.950

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