DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and Chd1

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:NP_001100935.1 Gene:Chd1 / 308215 RGDID:1306794 Length:1711 Species:Rattus norvegicus


Alignment Length:1828 Identity:509/1828 - (27%)
Similarity:802/1828 - (43%) Gaps:426/1828 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  1540 SDDENSLLVASPVKKDKKPSANASNSNAGSDVEKTEPQSGAEGD-AAQEVGEEKSNLPLDESSQL 1603
            ||:|:....:....:.:..|.:||.|.:||       .||:..| ::.:.|...|:...|..||.
  Rat     5 SDEESVRNGSGESSQSEDDSGSASGSGSGS-------SSGSSSDGSSSQSGSSDSDSGSDSGSQS 62

  Fly  1604 EASSSTSAVAEKERQISTDAANAAMSSKPNYVYINTGDEDSMVVQLVLAMRMGKRELILDKPKEK 1668
            |:.|.||  .|.:.|......:.|...|.|              ..:||:   :|..:|   :::
  Rat    63 ESESDTS--RENKVQAKPPKVDGAEFWKSN--------------PSILAV---QRSAML---RKQ 105

  Fly  1669 APEPKQDEEKSELDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEPDDSKK 1733
            ..:|:|....|....:..|....::...:..:.|:...:.|:.::..|.....|..:||.:|   
  Rat   106 TQQPQQQRPASSNSGSEEDSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSESED--- 167

  Fly  1734 SDEDNKDKDKMEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSSTVLTADHAKEPETVLEK 1798
             :.|....|..|.|.|.....|..||:.:|   |::...|.:.:.|..    .|.:::.:.  |.
  Rat   168 -ERDKSSCDGTESDYEPKNKVKSRKPQNRS---KSKSGKKILGQKKRQ----IDSSEDEDD--ED 222

  Fly  1799 MEVDEKANDDQSAVSKAEGSDEKSTDDSNPEEATTEKNKESLEIEGEKERVKEGE--ESVKK--- 1858
            .:.|::::..|:.|:.:...||:...||:          :.||:.||.....|.|  |::::   
  Rat   223 YDNDKRSSRRQATVNVSYKEDEEMKTDSD----------DLLEVCGEDVPQTEDEEFETIERFMD 277

  Fly  1859 ------------------ENDEKTEADMENKPEPVFIDVEEYFVKYRNFSYLHCEWRTEEELLKG 1905
                              |.|....|..|...||.  || :|.:|::.:|::|..|.|||.|.:.
  Rat   278 CRVGRKGATGATTTIYAIEADGDPNAGFEKSKEPG--DV-QYLIKWKGWSHIHNTWETEETLKQQ 339

  Fly  1906 DRRVAAKIRRFQQKQSQQLNIFENI--ED-EPFN--QDFTE--------VDRVLDMSVHTDETSG 1957
            :.|...|:..:::|..:.....:|.  || |.:|  |:.|:        |:|::   .|:::.|.
  Rat   340 NVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERII---AHSNQKSA 401

  Fly  1958 ETTKHYLVKWKSLPYEDCTWE---LEEDVDNDKIEQYLRFNKIPQRSEWKS----KKRPHPELWK 2015
            .....|..||:.|||.:|:||   |........|::|...|: .:.:.:|.    |:||.   :.
  Rat   402 AGLPDYYCKWQGLPYSECSWEDGALISKKFQTCIDEYFSRNQ-SKTTPFKDCKVLKQRPR---FV 462

  Fly  2016 KLEKTPVYKGGN---SLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVY-EYGI 2076
            .|:|.|.|.||:   .||.|||.|||||..||...::||||||||||||||:::|::.:: |:.:
  Rat   463 ALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQL 527

  Fly  2077 RGPFLVIAPLSTIPNWQREFEGW-TDMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNV 2140
            .||||::.||||:.:||||.:.| :.||.|||.|.:.|:.||:.:|:.:..      .:.:|||:
  Rat   528 YGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQ------TKRLKFNI 586

  Fly  2141 LITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISEL 2205
            |:||:|:::.|...|...||....:||||||||.:..|.:.|......||:|::||||||::.||
  Rat   587 LLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKEL 651

  Fly  2206 FSLLNFLEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVE 2270
            :|||:|:.|.:|||.|:|..|.|..| |.....|...|:|.:|||:|.||||||..|.|.|:.:|
  Rat   652 WSLLHFIMPEKFSSWEDFEEEHGKGR-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRME 715

  Fly  2271 LTNIQKKYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHG 2335
            ::.:||:||:.||.:|:..|.|| :..:....:|.||||:|||.|.||:...:....|       
  Rat   716 MSALQKQYYKWILTRNYKALSKG-SKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFY------- 772

  Fly  2336 EDPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRI 2400
             :.:...::||.|:||::|:||||.:|:..|:||||||||||.||||.:||.||::||:|:||.|
  Rat   773 -NKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSI 836

  Fly  2401 RGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQ 2465
            :|.||::|:|.::..||:.|.|||.|:||||||||.:||||:|:|||||||||||||||.|||||
  Rat   837 KGELRRQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ 901

  Fly  2466 RKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNT-------QGSKDGNNKQLSKKEIEDL 2523
            :|.|.||||:.:.:.|.::.::|..|:.||..|:|.|:|       .||...::...:|:|:..:
  Rat   902 KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 966

  Fly  2524 LKKGAYGAVMDDDNAGDKFCEEDIDSILKRRTQVITMESEKG---------STFSKASFAASGNR 2579
            ||.||.....:.:....:..|.|||.||||..   |.|:|.|         |.|..|:|:     
  Rat   967 LKFGAEELFKEPEGEEQEPQEMDIDEILKRAE---THENEPGPLTVGDELLSQFKVANFS----- 1023

  Fly  2580 SDITIDDPDFWTKWAKKVDIDPDACERDETEDLVLSEPRRR--TQIKRYGHEDVMELNSEESSNE 2642
               .:|:.|        ::::|:...:: .||::..|.|||  .:.::...|::..|....:..:
  Rat  1024 ---NMDEDD--------IELEPERNSKN-WEDIIPEEQRRRLEEEERQKELEEIYMLPRMRNCAK 1076

  Fly  2643 NSDEEGGIGLRSRRRK---------EKRDRAREKKGNDEYIPRERDALAALGLEEIQYGNWAKSE 2698
            .....|..|.|||.|:         .:|.|.: |:|....||||.    ..|..:.:...:.|| 
  Rat  1077 QISFNGSEGRRSRSRRYSGSDSDSISERKRPK-KRGRPRTIPREN----IKGFSDAEIRRFIKS- 1135

  Fly  2699 CFKVEKGLLSFGWGRWSELLELGQFKRGWRDVDVEDCARIILLYCLQVYKGDEKIKTFIWDLITP 2763
             :|      .|| |....|..:.      ||.::.|                 |.:|.:..|...
  Rat  1136 -YK------KFG-GPLERLDAIA------RDAELVD-----------------KSETDLRRLGEL 1169

  Fly  2764 TEDGEVQKISRDHSGLHNLVPRGRNGGKSNK------ESTGVSTPAPGSASGSNSGNTTPAHKSS 2822
            ..:|.|:.:....||..      |.||:..|      ..:||...|  ....::.....|.|||.
  Rat  1170 VHNGCVKALKDSSSGTE------RAGGRLGKVKGPTFRISGVQVNA--KLVIAHEDELIPLHKSI 1226

  Fly  2823 ALDGSDKDSGGINASAVAAAVTSIHDPNHWSKKEKYDADAYLEGAYKKHLGRHANKVLLRVRMLY 2887
            ..|..::....|.....||     |....|.|::                               
  Rat  1227 PSDPEERKQYTIPCHTKAA-----HFDIDWGKED------------------------------- 1255

  Fly  2888 YIQHEVIGDFVQQIKDNTPISELPIRPPPTPDQVPSSWWNPICCDKSLLVGTYKHGCEMYRQMRA 2952
                                                        |.:||:|.|::|...:..::.
  Rat  1256 --------------------------------------------DSNLLIGIYEYGYGSWEMIKM 1276

  Fly  2953 DPNLCFVTHVGAGAAGDDLAVTSLPINEDDANSKHDDGDEVDDDGTTTTKDSDSTKLTGGDNKDS 3017
            ||:|. :||            ..||          ||.|:........|:.....||...|    
  Rat  1277 DPDLS-LTH------------KILP----------DDPDKKPQAKQLQTRADYLIKLLSRD---- 1314

  Fly  3018 LLDPERPSSSGKSSSENASGGNDKTESENDATTVSESSYKSEVLPGKGSDLDVSVAQQDALSATP 3082
            |...|....||...|:.......|.::........|....|..||.:.|:      ::|      
  Rat  1315 LAKKEAQRLSGAGGSKRRKTRAKKNKAMKSIKVKEEIKSDSSPLPSERSE------EED------ 1367

  Fly  3083 ELANTSDPKMNKNDAQVSASVSCDPAD-SSSPEAAGKAQGTGVQTGDAGELDIES---------- 3136
              .|.:|.|....|....:.||..|.. ::|.|....|:       ::.|||.::          
  Rat  1368 --DNVNDSKPESKDRSKKSVVSDAPVHITASGEPVPIAE-------ESEELDQKTFSICKERMRP 1423

  Fly  3137 -----------EKKDNEKETKEST-------GD----------------------------APAV 3155
                       ||..:|:|..|.|       ||                            ....
  Rat  1424 VKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEF 1488

  Fly  3156 EAKKDSAAIARAEGDKTESCTN-NATTNISTTTTTTTITNTTTTTNNPSSKAANSNNTTDHA--- 3216
            :|:|.......|...:.||..| :..:|:.          ||....||..:....|...|.:   
  Rat  1489 DARKLHKLYKHAIKKRQESQQNSDQNSNVP----------TTHVIRNPDMERLKENTNHDDSSRD 1543

  Fly  3217 --NSNSHL 3222
              :|:.||
  Rat  1544 GYSSDRHL 1551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 50/232 (22%)
HepA 1676..2527 CDD:223627 329/905 (36%)
SDA1 <1693..>1854 CDD:283052 34/162 (21%)
CHROMO <1879..1919 CDD:237991 12/39 (31%)
Chromo 1941..1996 CDD:278797 16/65 (25%)
DEXDc 2048..2197 CDD:238005 64/150 (43%)
Helicase_C 2350..2464 CDD:278689 75/113 (66%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
Chd1NP_001100935.1 CD1_tandem_CHD1-2_like 268..352 CDD:349313 20/86 (23%)
CD2_tandem_CHD1-2_like 385..441 CDD:349308 16/58 (28%)
DEAD-like_helicase_N 458..695 CDD:421690 109/246 (44%)
PLN03142 462..>998 CDD:215601 254/551 (46%)
CDH1_2_SANT_HL1 1122..1208 CDD:408175 24/123 (20%)
PTZ00121 <1292..1574 CDD:173412 54/295 (18%)
DUF4208 1408..1498 CDD:404744 13/89 (15%)
PHA03420 1591..>1691 CDD:177648
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0384
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.