DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and chd-1

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:NP_491994.2 Gene:chd-1 / 172432 WormBaseID:WBGene00010369 Length:1461 Species:Caenorhabditis elegans


Alignment Length:1480 Identity:438/1480 - (29%)
Similarity:686/1480 - (46%) Gaps:302/1480 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1664 KPKEKAPEPKQDEEKSELDEATTDKPEGDEKFKTEGESKKDLTDSEETKLESSAMEVDSKEESEP 1728
            :|.||..||.::||..|.:..:.|..| .||.....||..|.:|..:...|:|:       .|||
 Worm    14 EPDEKTDEPVREEENPEGNSTSEDNDE-KEKAADSPESSSDQSDDSDDASENSS-------SSEP 70

  Fly  1729 DD--SKKSDEDNKDKD----KMEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDKSSTVLTAD 1787
            |:  .||.:.:|:..|    |:..::...:..|.||.::.|.:..:|| |::.|:|..      |
 Worm    71 DEPAPKKKNNNNRGMDAETRKLLENENYFRRSKRSKRQDDSPSDNSEE-SQSSEDDWD------D 128

  Fly  1788 HAKEPETVLEKMEVDEKANDDQSAVSKAEGSD--------EKSTDDSNPEEATTEKNKE-SLEIE 1843
            ..|...||.:|:     ....:.|||..:...        ||::||...::...|.::| ::..|
 Worm   129 RRKPRRTVTKKV-----VKQTKKAVSVVKRKSVKGNVNYAEKNSDDDIDDDDVLEWDEEPAVPAE 188

  Fly  1844 GEK------ERVKEGEESVKKENDEKTE----ADMENKPEPVFID--VEEYFVKYRNFSYLHCEW 1896
            |..      |||.:....|.......|.    ||..:..:.:..|  .:::|||:..:|:||..|
 Worm   189 GPAILTETVERVIKWRHGVPGATGSATTCYNIADKGDPNDQIPGDKTEQQFFVKWTGWSHLHNTW 253

  Fly  1897 RTEEELLKGDRRVAAKIRRFQQKQ-----------SQQLNIFENIED--EPFNQDFTEVDRVLDM 1948
            .:|..|...:.:...|::.:.:||           .:.:..||..:.  |...:::.:|:||:..
 Worm   254 ESENSLALMNAKGLKKVQNYVKKQKEVEMWKRSADKEYIEFFECEQQMAEELCEEYKKVERVVAH 318

  Fly  1949 SVHTDETS-GETTKHYLVKWKSLPYEDCTWELEEDVDNDKIEQY---LRFNKIPQRSEWKSKKRP 2009
            ....|..: |.....||:||..|||.|||||.|:.|..::|:.|   :...|.|.::....:|||
 Worm   319 QTSRDRAADGSMATEYLIKWSGLPYSDCTWEDEKMVAPEQIKAYYHRIENLKSPNKNSNVLRKRP 383

  Fly  2010 HPELWKKLEKTPVY-----KGGNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVH 2069
            .   ::|.|..|.:     :..:.||.||||||||:.::|...::.||||||||||||||::.:.
 Worm   384 K---FEKFESMPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLA 445

  Fly  2070 SVY-EYGIRGPFLVIAPLSTIPNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVL 2132
            |:: .|.:.||:||:.||||:..||:||..|. :||:|||.|.|.|:.||:.||::.    |...
 Worm   446 SLFHRYDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFV----GGTK 506

  Fly  2133 KEPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTP 2197
            |  :|.|.::||:|:::.|...|.:.:|...::||||||||....|.:.|.|....|::|::|||
 Worm   507 K--MKINAILTTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTP 569

  Fly  2198 LQNNISELFSLLNFLEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPK 2262
            |||::.||::||:|:.|.:|...|||.:.... ...:.::.|...|:|.:|||:|.||||||.||
 Worm   570 LQNSLKELWALLHFIMPEKFDCWEEFETAHNE-SNHKGISALHKKLEPFLLRRVKKDVEKSLPPK 633

  Fly  2263 EETIIEVELTNIQKKYYRGILEQNFSFLKKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQ 2327
            .|.|:.|::|..||::|:.||.:|:..|.|| ...:|...:|.:|||:|||.|..|..      |
 Worm   634 TEQILRVDMTAHQKQFYKWILTKNYRELSKG-VKGSINGFVNLVMELKKCCNHASLTR------Q 691

  Fly  2328 YDFKSQH-GEDPESYYKNLILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKY 2391
            ||    | .:|.:...:.|:.|:||::|:||||.:||..|||||||||||..||||::||..|::
 Worm   692 YD----HIYDDAQGRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRF 752

  Fly  2392 PFERIDGRIRGNLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQA 2456
            |.:|:||.:|.:||::|:|.|:.|||..|.|||.|:||||||||..||||||:||||||||||||
 Worm   753 PSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQA 817

  Fly  2457 QARCHRIGQRKMVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQG----SKD---GNNKQ 2514
            .:|.|||||.|.|.||||:.:.:.|.|:.::|..||.||..|:|.|:|.|    ||:   ..:..
 Worm   818 MSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRMDTTGKTVLSKNATASGSVP 882

  Fly  2515 LSKKEIEDLLKKGAYGAVMDDDNAGDKFCEEDIDSIL-----KRRTQVITMESEKGSTFSKASFA 2574
            ..|:|:..:||.||. .:..:....::..|.|||.||     :...:.:..|:|..|:|..|:||
 Worm   883 FDKQELSAILKFGAV-ELFKEKEGEEQEPEVDIDRILMGAETREAEEEVMKENELLSSFKYANFA 946

  Fly  2575 ASGNRSDITIDDPDFWTKWAKKVDIDPDACERDETEDLVLSEPRRRTQIKRYGHEDVMELN---- 2635
            ....:......|     :||        |...:|..:.:|.|.|.:         ::.|:|    
 Worm   947 IDEEKDIAAATD-----EWA--------AIIPEEDRNRILEEERMK---------ELAEMNLAPR 989

  Fly  2636 ---------SEESSNENSDEEGGIGLRSRRRKEKRDRAREKKGNDEYIPRERDALAALGLEEIQY 2691
                     .|:...::.:||...|      |:|:.:|                          .
 Worm   990 QRKQPIPQVVEDDDGDDDEEEDDTG------KKKKKKA--------------------------V 1022

  Fly  2692 GNWAKSECFKVEKGLLSFGWGRWSELLELGQFKRGWRDVDVEDCARIILLYCLQVYKGDEKIKTF 2756
            ||:...|..:..|....|.       :.|.:.:...:|.::|:            :..||..|. 
 Worm  1023 GNFTIPEIKRFIKSFRKFS-------MPLNRLEEIAQDAELEE------------HSTDEMKKL- 1067

  Fly  2757 IWDLITPTEDGEVQKISRDHSGLHNLVPRGRNGGKSNKESTGVSTPAPGSASGSNSGNTTPAHKS 2821
                        |:.:|.                                           |.|.
 Worm  1068 ------------VESLSE-------------------------------------------ACKK 1077

  Fly  2822 SALDGSDKDSGGINASAVAAAVTSIHDPNHWSKKEKYDADAYLEGAYKKHLGRHANKVLLRVRML 2886
            :|   .:.||...|..|.||            :.||.|    :|..:|.|......|.:.|....
 Worm  1078 AA---DEFDSNEKNGDAGAA------------ESEKKD----IERKFKFHTCDVNLKQIERSHAE 1123

  Fly  2887 YYIQHEVIGDFVQQIKDNTPISELPIRPPPTPDQVPSSW---WN-PICCDKSLLVGTYKHGCEMY 2947
            ....||::.      .:.|..|    ..||...::...|   |: |  .|.:||:|.:|:|...:
 Worm  1124 LKPLHEILK------SEETKTS----FKPPANAKLQKGWDVDWSRP--DDSALLLGVWKYGYGSW 1176

  Fly  2948 RQMRADPNLCFVTHVGAGAAGDDLAVTSLPINEDDANSKHDDGDEVDDDGTTTTKDSDSTKLTGG 3012
            ..::.||.|        |.| |.:.:      :|..........:|..|........|..|.|..
 Worm  1177 EAIKMDPTL--------GLA-DKIFI------KDKTKKPQGKNLQVRVDYLLKLMSKDKVKTTEK 1226

  Fly  3013 DNKDSLLD--PERPSSSGKSSSENASGGNDKTESENDATTVSESSYKSEV 3060
            ..:....|  |..|....:.::.....|..|.:.:.:..  :.||.|.::
 Worm  1227 KERKRKADDVPVGPEKKKRHTNNVPQEGEKKKKEKKEEK--NSSSLKDQL 1274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 36/127 (28%)
HepA 1676..2527 CDD:223627 336/909 (37%)
SDA1 <1693..>1854 CDD:283052 45/181 (25%)
CHROMO <1879..1919 CDD:237991 10/39 (26%)
Chromo 1941..1996 CDD:278797 21/58 (36%)
DEXDc 2048..2197 CDD:238005 65/150 (43%)
Helicase_C 2350..2464 CDD:278689 74/113 (65%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
chd-1NP_491994.2 CHROMO <232..276 CDD:237991 11/43 (26%)
Chromo 312..362 CDD:278797 20/49 (41%)
SNF2_N 408..688 CDD:278600 126/287 (44%)
DEXDc 427..569 CDD:238005 65/147 (44%)
Helicase_C 710..825 CDD:278689 74/114 (65%)
DUF4208 1289..1379 CDD:290618
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I8230
eggNOG 1 0.900 - - E2759_KOG0384
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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