DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kis and chd1

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:XP_031749152.1 Gene:chd1 / 100485675 XenbaseID:XB-GENE-960477 Length:1797 Species:Xenopus tropicalis


Alignment Length:1829 Identity:515/1829 - (28%)
Similarity:796/1829 - (43%) Gaps:480/1829 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1512 DSEMDSNKRRSSRNTQRKKYIDDVMLRFSDDENSLLVASPVKKDKKPSANASNSNAGSDVEKTEP 1576
            ||..:||...|                .|||:               |.:.|.|::||..:.:..
 Frog     8 DSVSNSNGNSS----------------HSDDD---------------SGSGSGSSSGSSSDGSSS 41

  Fly  1577 QSGAEGDAAQEVGEEKSNLPLDESSQLEASSSTSAVAEKERQISTDAANAAMSSKPNYVYINTGD 1641
            |||:.                |..|..|:.|.:.:...||::        .:.|||..:   .|.
 Frog    42 QSGSS----------------DSESGSESGSQSDSDTSKEKK--------TVQSKPPRL---DGA 79

  Fly  1642 EDSMVVQLVLAMRMGKRELILDKPKEKAPEPKQDEEKSE---LDEATTDKPEGDEKFKTEGESKK 1703
            |.......:||:   :|..:|.|.:.:..:.:|.::.|.   .||.::...|.||...::.:.||
 Frog    80 EFWKSNPSILAV---QRSAMLRKQQLQQQQQQQRQQASSNSGSDEDSSSSDESDEDSSSDNKKKK 141

  Fly  1704 DLTDSEETKLESSAMEVDSKEESEPDDSKKSDED-NKDKDKMEVDDEVGKSDKESKPEEQSETVK 1767
              ...|:.::..|....||     |..|..||.| ..|:.|....|    |:.:.:|..:.:..|
 Frog   142 --RQDEDWQMSGSGSASDS-----PSASSSSDSDTGGDRQKSSGRD----SESDYEPSHKVKNKK 195

  Fly  1768 TEENSKAIEEDKSSTVLTADHAKEPETVLEKMEVDEKANDDQSAVSKAEGSDEKSTDDSNP---- 1828
            ::..|| ::..|:|                   ..:|..|       |:.||:...||.|.    
 Frog   196 SQNRSK-VKNGKTS-------------------AGQKKRD-------ADSSDDDYDDDYNKRVSR 233

  Fly  1829 EEATTEKN-KESLEIEGEKERVKE--GEESVKKENDE-------------------------KTE 1865
            .:||...: ||..|::.:.:.:.|  ||:..:.|.||                         ..|
 Frog   234 RQATVNVSYKEDEEMKTDSDDLLEVIGEDVPQPEEDEFETIERVMDSRFGRKGATGGTTTIYAVE 298

  Fly  1866 ADMENKPEPVFIDVEE-----YFVKYRNFSYLHCEWRTEEELLKGDRRVAAKIRRFQQKQSQQ-- 1923
            ||  ..|...|.:.:|     |.:|::.:|.:|..|.||:.|.:.:.:...|:..:::|:.::  
 Frog   299 AD--GDPNANFNETKEAGETQYLLKWKGWSSIHNTWETEDTLKQQNVKGMKKLDNYKKKEQEKKR 361

  Fly  1924 ------------LNIFENIEDEPFNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWKSLPYEDCT 1976
                        .|..:.:.|: .::.:..|:|::   .|:::.|......|..||:.|||.:|:
 Frog   362 WLKAASPEDIEYYNCQQELIDD-LHKQYQIVERII---AHSNQKSAAGYPDYFCKWQGLPYSECS 422

  Fly  1977 WE---LEEDVDNDKIEQYLRFNK---IPQRSEWKSKKRPHPELWKKLEKTPVYKGGN---SLRPY 2032
            ||   |.......:|::|:..|:   ||.:.....|:||.   :..|:|.|.|.|||   .||.|
 Frog   423 WEDGALIAKKFQARIDEYISRNQSKTIPFKECKVLKQRPR---FVALKKQPSYIGGNKQLELRDY 484

  Fly  2033 QLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVY-EYGIRGPFLVIAPLSTIPNWQREF 2096
            ||:|||||..||...::||||||||||||||:::|::.:: |:.:.||||::.||||:.:||||.
 Frog   485 QLDGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREI 549

  Fly  2097 EGWTD-MNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVTDYMDLKAFNW 2160
            :.|.. ||.|||.|.:.|:.||:.:|:.:..      .:.:|.|||:||:|:::.|...|...||
 Frog   550 QIWAPLMNAVVYLGDINSRNMIRTHEWMHPQ------TKRLKLNVLLTTYEILLKDKSFLGGVNW 608

  Fly  2161 RLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMS 2225
            ....:||||||||.:..|.:.|......||:|::||||||::.||:|||:|:.|.:|||.|:|..
 Frog   609 AFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 673

  Fly  2226 EFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQNFSFL 2290
            |.|..| |.....|...|:|.:|||:|.||||||..|.|.|:.||::..||:||:.||.:|:..|
 Frog   674 EHGKGR-EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSASQKQYYKWILTRNYKAL 737

  Fly  2291 KKGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKS--QHGEDPESYYKNLILSAGKMV 2353
            .|| :..:....:|.||||:|||.|.||:...||...|:.:.  ||          ||.|:||::
 Frog   738 SKG-SKGSTSGFLNIMMELKKCCNHCYLIKPPEENEFYNRQEALQH----------LIRSSGKLI 791

  Fly  2354 LIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSD 2418
            |:||||.:|:..|:||||||||||.||||.:||..|::||:|:||.|:|.:|::|:|.::..||:
 Frog   792 LLDKLLVRLRERGNRVLIFSQMVRMLDILAEYLKSRQFPFQRLDGSIKGEVRKQALDHFNAEGSE 856

  Fly  2419 RFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYERE 2483
            .|.|||.|:||||||||.:||||:|:|||||||||||||||.|||||:|.|.||||:.:.:.|.:
 Frog   857 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEED 921

  Fly  2484 MFDKASMKLGLDKAVLQSMNT-------QGSKDGNNKQLSKKEIEDLLKKGAYGAVMDDDNAGDK 2541
            :.::|..|:.||..|:|.|:|       .||...::...:|:|:..:||.||.....:.:...::
 Frog   922 IIERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELAAILKFGAEELFKEPEGEEEE 986

  Fly  2542 FCEEDIDSILKRRTQVITMESEKG---------STFSKASFAASGNRSDITIDDPDFWTKWAKKV 2597
            ..|.|||.||||..   |.|:|.|         |.|..|:|:        |:::.|.        
 Frog   987 PQEMDIDEILKRAE---TRENEGGPLTVGDELLSQFKVANFS--------TMEEDDM-------- 1032

  Fly  2598 DIDPDACERDET--EDLVLSEPRRRTQIKRYGHEDVMEL-------NSEESSNENSDEEGGIGLR 2653
             ::|:   ||..  ||::.::.|||.: :....:::.|:       |..:.:|.|..|    |.|
 Frog  1033 -VEPN---RDSKSWEDIIPTDQRRRME-EEEREKELQEIYLLPRMRNCAKQANFNGSE----GRR 1088

  Fly  2654 SRRRK-------EKRDRAREKK-GNDEYIPRERDALAALGLEEIQYGNWAKSECFKVEKGLLSFG 2710
            ||.|:       ...||.|.|| |....||||.    ..|..:.:...:.||  :|      .||
 Frog  1089 SRNRRYSGSDSDSMSDRKRPKKRGRPRTIPREN----IKGFSDAEIRRFIKS--YK------KFG 1141

  Fly  2711 W--------GRWSELLELGQFKRGWRDVDVEDCARIILLYCLQVYKGDEKIKTFIWDLITPTEDG 2767
            .        .|.:||::..       :.|:.....:|...|::..|                   
 Frog  1142 GPLERLDAIARDAELVDKS-------ETDLRRLGELIHSGCIKALK------------------- 1180

  Fly  2768 EVQKISRDHSGLHNLVPRGRNGGKSNK------ESTGVSTPAPGSASGSNSGNTTPAHKSSALDG 2826
                   |.||      :.|.||:..|      ..:||...|  ....|:.....|.|||...|.
 Frog  1181 -------DSSG------QERAGGRRGKMKGPTFRISGVQVNA--KLVSSHEDELAPLHKSIPSDP 1230

  Fly  2827 SDKDSGGINASAVAAAVTSIHDPNHWSKKEKYDADAYLEGAYKKHLGRHANKVLLRVRMLYYIQH 2891
            .::....|.....||     |....|.|::                                   
 Frog  1231 DERKRYVIPCHTKAA-----HFDIDWGKED----------------------------------- 1255

  Fly  2892 EVIGDFVQQIKDNTPISELPIRPPPTPDQVPSSWWNPICCDKSLLVGTYKHGCEMYRQMRADPNL 2956
                                                    |.:||:|.|::|...:..::.||:|
 Frog  1256 ----------------------------------------DSNLLIGIYEYGYGSWEMIKMDPDL 1280

  Fly  2957 CFVTHVGAGAAGDDLAVTSLPINEDDANSKHDDGDEVDDDGTTTTKDSDSTKLTGGDNKDSLLDP 3021
                         :|....||          ||.|:........|:.....||.   |||.|   
 Frog  1281 -------------NLTQKILP----------DDPDKKPQAKQLQTRADYLIKLL---NKDLL--- 1316

  Fly  3022 ERPSSSGKSSSENASGGNDK------TESENDATTVSESSYKSEVLPGKGSDLDVSVAQQDALSA 3080
                  .|.:...:||||.|      .:|:|......|...|||..|....:   |..::|....
 Frog  1317 ------RKEAQRLSSGGNSKRRKTRAKKSKNVKPVKVEEETKSESSPPSSEN---SEEEEDQEET 1372

  Fly  3081 TPELANTS--DPKMNKNDAQVSASVSCDPADSSSPEAAGKAQGTGVQTGDAGELDIESEKKD--N 3141
            .|...|..  ..|.|::..::..||:.:|.:..                     :|:..|||  .
 Frog  1373 VPLRTNNKRRAEKENEDRTELDVSVNKEPEEKK---------------------EIKENKKDPKK 1416

  Fly  3142 EKETKESTGDAPAVEAKKDSAAIARAEGDKTESCTNNATTNI--------STTTTTTTITNTTTT 3198
            ||:.||...|....|| :|...|...|..|.:.......|.:        .:....|.:..|.::
 Frog  1417 EKKEKEEKRDTTEKEA-RDKKEIKTKEPVKEKEIKEEKVTEVKAEKEKPKKSILADTPVHITASS 1480

  Fly  3199 TNNPSSKAA 3207
            ...|.|:.|
 Frog  1481 EPVPISEEA 1489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 52/235 (22%)
HepA 1676..2527 CDD:223627 334/925 (36%)
SDA1 <1693..>1854 CDD:283052 37/168 (22%)
CHROMO <1879..1919 CDD:237991 10/44 (23%)
Chromo 1941..1996 CDD:278797 16/57 (28%)
DEXDc 2048..2197 CDD:238005 64/150 (43%)
Helicase_C 2350..2464 CDD:278689 73/113 (65%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
chd1XP_031749152.1 CD1_tandem_CHD1-2_like 270..354 CDD:349313 16/85 (19%)
CD2_tandem_CHD1-2_like 387..443 CDD:349308 16/58 (28%)
PLN03142 464..>1000 CDD:215601 258/553 (47%)
CDH1_2_SANT_HL1 1123..1208 CDD:408175 22/131 (17%)
DUF4208 1491..1581 CDD:404744
U2AF_lg 1669..>1778 CDD:273727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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