DRSC/TRiP Functional Genomics Resources

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Protein Alignment kis and chd4

DIOPT Version :9

Sequence 1:NP_001137761.1 Gene:kis / 33185 FlyBaseID:FBgn0266557 Length:5517 Species:Drosophila melanogaster
Sequence 2:XP_012821318.2 Gene:chd4 / 100124711 XenbaseID:XB-GENE-995848 Length:1890 Species:Xenopus tropicalis


Alignment Length:1915 Identity:524/1915 - (27%)
Similarity:815/1915 - (42%) Gaps:449/1915 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  1378 LVPKAGSADGEAETTSGGTGVDGESPDYDDIPVSKIPRGSNEDEKEAEAGDETVDSVPDSAGDPA 1442
            |.|.:..:|||.|.....:    ...|.||:         :||..|.||........|..|.:..
 Frog     5 LGPSSPGSDGEIEVMLNSS----IHQDDDDL---------DEDLSEVEAPKIKKKKKPKKAKESK 56

  Fly  1443 STPSRRDRKRSTARSRRNAN---SEEGGSARKNR-------GSLSAKALKKRRNRGRIVPESDGE 1497
            :|..:|.:|.....|....|   .::||..|.:.       |....|.|.::|.: :...:.|.:
 Frog    57 ATKVKRQKKEEIDDSSGEGNDYGDDDGGPIRSDSEGSDYTPGKKKKKKLAQKREK-KSKAKRDND 120

  Fly  1498 DDTLDRTPPPSPPPDSEMDSNKRRSSRNTQRKKYIDDVMLRFS-DDENSLLVASPVKKDKKPSAN 1561
            ||            |.:.||.:.:||........::|:...|: ||..:|.......:..:|...
 Frog   121 DD------------DDDDDSKEPKSSAQLLDDWGMEDIDHVFTEDDYRTLTNYKAFSQFVRPLIA 173

  Fly  1562 ASNSNAGSDVEKTEPQSGAEGDAAQEVGEEKSNLPLDESSQLE-ASSSTSAVAEKERQI-STDAA 1624
            |.|....  |.|.....||:.      .|..:|.||..||... |:::.:|||..|..: ||:..
 Frog   174 AKNPKIA--VSKMMMVLGAKW------REFSTNNPLKGSSGASVAAAAAAAVAVVESMVASTEVV 230

  Fly  1625 NAAMSSKPNYVYINTGDEDSMVVQLVL---AMRMGKRELILDKPK-EKAPEPKQDEEKSELDEAT 1685
            .......|          ...|.::.|   ..:.||......||| .:.||.|:..:.       
 Frog   231 VPPPPPPP----------PPPVAEVPLRKAKTKEGKGPNARKKPKVVRPPEAKKTPKA------- 278

  Fly  1686 TDKPEGDEKFKTEG-ESKKDLTDSEETKLESSAM----EVDSKEESEPDDSKKSDEDNK---DKD 1742
              |.....|.|..| .||:..:.|||..:::.:.    .::|...|:...||.|....|   .|.
 Frog   279 --KKVAPLKIKLGGFGSKRKRSSSEEEDVDADSEYDEGSMNSLSVSDGSTSKSSRSRKKLKATKK 341

  Fly  1743 KMEVDDEVGKSDKESKPEEQSETVKTEENSKAIEEDK-----SSTVLTADHAKEPE-----TVLE 1797
            |.:.|:..|.:....:.:.|......::..:.|..|.     ....|..|..|.||     ...|
 Frog   342 KKKEDEAAGGAADGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMDKAPEGKWSCPHCE 406

  Fly  1798 KMEVDEKANDDQSAVSKAEGSDEKSTDDSNPEEATTE---------------------------- 1834
            |..|..:|.:|.|.:     .|:......:|||....                            
 Frog   407 KEGVQWEAKEDNSEI-----DDDMDDTVGDPEEEDHHMEFCRVCKDGGELLCCDACPSSYHIHCL 466

  Fly  1835 -------KNKESL-------EIEGEKERV---KEGE----ESVKKENDEKTEA----DMENKPEP 1874
                   .|.|.|       .::|:.:::   |.|:    ..|.:..|...||    .:|.:|| 
 Frog   467 NPPLPEIPNGEWLCPRCTCPALKGKIQKILTWKWGQPPPPTPVPRPADADPEAPPPKPLEGRPE- 530

  Fly  1875 VFIDVEEYFVKYRNFSYLHCEWRTEEEL------------------------LKGDRRVAAKIRR 1915
                 .|:|||::..|||||.|.||.:|                        ..||..  .|.|:
 Frog   531 -----REFFVKWQAMSYLHCSWVTELQLELHCQVMFRNYQRKNDMDEPPAGDYGGDDE--EKSRK 588

  Fly  1916 FQQKQSQQLNIFENIEDEPFNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWKSLPYEDCTWELE 1980
            .:.|..:.|.:.|.........::..:.|||:   |:.:..|..  |||:||:.|||:..:||.|
 Frog   589 RKNKDPKYLEMEEKFYRYGIKPEWMMIHRVLN---HSVDKKGFV--HYLIKWRDLPYDQASWESE 648

  Fly  1981 E-DVDNDKIEQYLRFN-----------------KIPQRSEWKSKKRPHPELWKKLEKTPVY--KG 2025
            | |:.:..|.:...:|                 |:..|...:....|..:...|.::.|.|  ..
 Frog   649 ESDIQDYDIYRQAYWNHRELMCGDEGRPGKKTKKVKLRKVERPPDTPAVDPTVKYDRQPEYLDAT 713

  Fly  2026 GNSLRPYQLEGLNWLKFSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYG-IRGPFLVIAPLSTI 2089
            |.:|.||||||||||:|||....:.|||||||||||:|:..|::|:|:.| .:|||||.||||||
 Frog   714 GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI 778

  Fly  2090 PNWQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYK-------TESGKVLKE-PIKFNVLITTF 2145
            .||:||||.|. ||.||.|.|...|:.:|::.|:.::       .::.::.|| .:||:||:|::
 Frog   779 INWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSY 843

  Fly  2146 EMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLN 2210
            |:|..|...|.:.:|...|:||||||||...|....|...:|:|::||:|||||||:.|||.|||
 Frog   844 ELITIDMAVLGSIDWACLVVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLN 908

  Fly  2211 FLEPSQFSSQEEFMSEFGSLRTEEEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQ 2275
            ||.|.:|::.|.|:.||..:..|:::.||..:|.|.||||||.||.|::..|.|.|:.|||:.:|
 Frog   909 FLTPERFNNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQ 973

  Fly  2276 KKYYRGILEQNFSFLK-KGTTSANIPNLMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPE 2339
            ||||:.||.:||..|. :|  ..|..:|:|.:|:|:|||.||||...|..:..        :.|.
 Frog   974 KKYYKFILTRNFEALNARG--GGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAP--------KMPN 1028

  Fly  2340 SYYKN--LILSAGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRG 2402
            ..|..  ||..|||::|:.|:|.|||.:||||||||||.:.||:|||:|.:..|.:|||||.|.|
 Frog  1029 GMYDGSALIKGAGKLLLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITG 1093

  Fly  2403 NLRQEAIDRYSKPGSDRFVFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRK 2467
            |:|||||||::.||:.:|.|||.|:||||||||..||||:||||||||.||:||.:|.|||||.|
 Frog  1094 NMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNK 1158

  Fly  2468 MVKIYRLLCRNTYEREMFDKASMKLGLDKAVLQSMNTQGSKDGNNKQLSKKEIEDLLKKGAYGAV 2532
            .|.|||.:.|.:.|..:...|..|:.|...|::.  ..|||.|:   :||:|::|:||.|.....
 Frog  1159 KVMIYRFVTRASVEERITQVAKKKMMLTHLVVRP--GLGSKTGS---MSKQELDDILKFGTEELF 1218

  Fly  2533 MD----DDNAGD-----KFCEEDIDSILKRR----TQVITME--SEKGSTFSKASFAA----SGN 2578
            .|    ::..||     .:.::.|..:|.|.    ..::.::  :|..|:|..|.:..    .|:
 Frog  1219 KDEATEENKEGDDISVIHYDDKAIARLLDRNQDETEDLVELQGMNEYLSSFKVAQYVVREEEMGD 1283

  Fly  2579 RSDITID--------DPDFWTKWAKKVDIDPDACERDETEDLV--LSEPRR-RTQIK-RYGHEDV 2631
            ..::..:        |||:|.|..:.       ....:.|||.  |.:.:| |.|:. ..|.::.
 Frog  1284 EEEVVREIIKQEESVDPDYWEKLLRH-------HYEQQQEDLARNLGKGKRIRKQVNYNDGSQED 1341

  Fly  2632 MELNSEESSNEN----SDEEGGIGLRSRRRKEKR-DRAREKKGNDEYIPRERDALAALG--LEEI 2689
            .:...::|.|::    :.|||......|....:| :|...:...|:.:|   ..||.:|  :|.:
 Frog  1342 RDWQDDQSDNQSDYSVASEEGDEDFDERSEAARRPNRKGLRNDKDKPLP---PLLARVGGNIEVL 1403

  Fly  2690 QYGNWAKSECFKVEKGLLSFGWGRWSELLELGQFKRGWRDVDVEDCARIILLYCLQVYKGDEKIK 2754
            .: |..:.:.|.  ..::.:|      :.....|...|...|:..             |.:::.|
 Frog  1404 GF-NARQRKAFL--NAIMRYG------MPPQDAFTTQWLVRDLRG-------------KSEKEFK 1446

  Fly  2755 T----FIWDLITPTEDGEV--------QKISRDH----SGLHNLVPR---------GR------N 2788
            .    |:..|..|..||..        :.:||.|    .|:.:|:.:         ||      .
 Frog  1447 AYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPELA 1511

  Fly  2789 GGKSNKESTGVSTPAPGSASGSNSGNT---TPAHKSSALDGSDKDSGGINASAVAAAVTSIHDPN 2850
            ..:.||:::.:.:|:|.:.:.|..|:|   |||..:|..|.:..:...:......|.|.:..:.|
 Frog  1512 EAEENKKASQIDSPSPKTPTSSTPGDTQPNTPAPPASNEDSTKSEEVPVKEETPDAEVKATEENN 1576

  Fly  2851 HWSKKEKYDADAYLEGAYKKHLGRHANKVLLRVRMLYYIQHEVIGDFVQQIKDNTPISELPIRPP 2915
            ..::..:.......:...||.                        :.|:|.|.:.|       ||
 Frog  1577 ESAQPAQEARSPAAQTEEKKE------------------------EPVKQEKTSPP-------PP 1610

  Fly  2916 PTPDQVPSSWWNPICCDKSLLVGTYKHGCEMYRQMRADPNLCFVTHVGAGAAGDDLAVTSLPINE 2980
            |.|                                                          |..|
 Frog  1611 PPP----------------------------------------------------------PATE 1617

  Fly  2981 DDANSKHDDGDEVDDDGTTTTKDSDSTKLTGGDNKDSLLDPERPSSSGKSSSENASGGNDKT--- 3042
            .....:..:.::||:..|...|..|..::|       |.:.|.|..:.:..::.||....|.   
 Frog  1618 PMETDQKPEPEKVDEVITLDDKKDDVQEVT-------LQNGETPKETAEEKTKKASAAAAKQRFM 1675

  Fly  3043 ---------------ESENDATTVSESSYK 3057
                           ::|..|.||::.:|:
 Frog  1676 FNIADGGFTELHSLWQNEERAATVTKKTYE 1705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kisNP_001137761.1 BASP1 1554..1786 CDD:283191 54/250 (22%)
HepA 1676..2527 CDD:223627 349/978 (36%)
SDA1 <1693..>1854 CDD:283052 42/227 (19%)
CHROMO <1879..1919 CDD:237991 17/63 (27%)
Chromo 1941..1996 CDD:278797 20/72 (28%)
DEXDc 2048..2197 CDD:238005 71/158 (45%)
Helicase_C 2350..2464 CDD:278689 74/113 (65%)
RR_TM4-6 3728..>3877 CDD:283990
BRK 4569..4613 CDD:197800
chd4XP_012821318.2 CHDNT 147..200 CDD:400425 13/60 (22%)
PHD1_CHD_II 363..405 CDD:277006 7/41 (17%)
PHD2_CHD_II 441..483 CDD:277007 3/41 (7%)
CD1_tandem_CHD3-4_like 488..566 CDD:349314 23/83 (28%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 19/58 (33%)
PLN03142 715..>1256 CDD:215601 259/555 (47%)
DEXHc_CHD4 717..948 CDD:350814 112/230 (49%)
DUF1087 1289..1334 CDD:399459 12/51 (24%)
DUF1086 1371..1510 CDD:368921 28/163 (17%)
fibronec_FbpA <1506..>1603 CDD:411474 18/120 (15%)
CHDCT2 1704..1829 CDD:400426 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D54215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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