DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tbc1d15-17 and rabgap1l

DIOPT Version :9

Sequence 1:NP_001259806.1 Gene:Tbc1d15-17 / 33184 FlyBaseID:FBgn0031233 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_001361730.1 Gene:rabgap1l / 550007 XenbaseID:XB-GENE-483580 Length:1056 Species:Xenopus tropicalis


Alignment Length:846 Identity:145/846 - (17%)
Similarity:275/846 - (32%) Gaps:296/846 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESVRYDRCHQVQLGVFNESQL-SSVEEDVQNLP------QQGTGNILFTHDGVLLKKASAE-- 56
            |:|.:|.....|      |.:.| .::.|::...|      ..||.|:..|   ::|...|.|  
 Frog    52 MEEILRDSEKTQ------NSNMLKETITEELSTFPTASHFSDTGTKNVPLT---LILDPKSTELP 107

  Fly    57 ----------------------HIADLNTSGSLSLVEYSRSIAEMPRR-------RLLLEWQPND 92
                                  ::..:..|...:.:|..|::|.|..:       .|.:...|..
 Frog   108 VQSTTVLSHPPEEESVSFHKLCYLGCMKVSAPRNEIEALRAMASMKAQCIAPITVTLYVPNIPEG 172

  Fly    93 SIMIADDSQDQ-----GDWALVDRISGRTRTTS-ECRAFNTRPIEPSGGATTRSRVMRAQLED-- 149
            |:.|.|.:...     ..:.::..:.||..|:. :|.||..|.:   |....:..|...::::  
 Frog   173 SVRIIDQTNKSEIASFPIYKVLFCVRGRDGTSECDCFAFTERDL---GTEEFQIHVFSCEIKEAV 234

  Fly   150 ------------------------------------LSSVEVRHRGQTIRF----------MRKG 168
                                                :.|:||:.......|          ..|.
 Frog   235 SRILYSFFTAFKRSSRQVSDVKDSALPTPDSDVFTFMVSLEVKEDDSKGNFSPVPKDRDKLFFKL 299

  Fly   169 ANGVHSEFFF---QHGNADLFV-----------RSMR--DQHLIENAETSRSG-GEVYAI----- 211
            ..|:..:...   |..|.:|.|           |:::  |.||::.....:|. |:.|.|     
 Frog   300 KQGIEKKVVVTIQQVSNKELLVERCFGMLLSPGRNVKNSDMHLLDMESMGKSSDGKAYVITGIWN 364

  Fly   212 --------LTTENQKLKKTFAELDIGQIKASQLPRESWLPNKLAGILGNIPDYVQPP-------- 260
                    |..|..|.|:.:..:.:..:                     :.:.|:|.        
 Frog   365 PNIQAFQALNEETPKDKRVYMTVAVDMV---------------------VTEVVEPVRFLLETVV 408

  Fly   261 -----------FQRSP-------KSRPGVLISGDRQTSPDNYQIIGLSGST------NSACSSNG 301
                       |.|..       |.:|    ||:...:...|:::.|...:      .|..|::.
 Frog   409 RVYPTNERFWYFSRKAFTDTFYLKLKP----SGNIGVTDSMYEVVSLQRQSEIEEAPTSPLSASN 469

  Fly   302 QSRGGSAEKSPADSELETLNAQDEKIVNNLPDR------QRVERGHPLTETQWLEFQTPDGRISD 360
            .|.....:....:|:.|..:...: :..:.|::      |.:.:.|.....:      |.|    
 Frog   470 LSSPQEEDDPEEESDTELWSGTGD-VSKDCPEQILDCWGQLLVKWHSNLSVK------PKG---- 523

  Fly   361 SARIKELIFRGGVVQSLRPEVWKFLLNYYLWSDTHVERIERRKQKSIEYYNMKAQWLAMTTTQEA 425
               :..|:.| |:.::||.|||:.|...:            ..|:.::.|.|   .:...:.|::
 Frog   524 ---LSSLVKR-GIPEALRAEVWQLLAGCH------------ENQEMLDKYKM---LVVKDSAQDS 569

  Fly   426 NFCGYRERKCQIEKDVKRTDRSLQFFAGEDNPNLTLLQGILMTYVMYNFDLGYVQGMSDLLAPIL 490
                      .|.:|:.||..:..:|...:......|..:...|.:|:..:||.|||| .||.:|
 Frog   570 ----------VIRRDIHRTFPAHDYFKNTEGDGQESLYKMCKVYSLYDEVIGYCQGMS-FLAAVL 623

  Fly   491 EIQVNEVDTFWCFV------GFMELVFTNFDIDQAGMKTQFAQIRRLIEFANAPLFNYMRSHDSD 549
            .:.:.|...|...|      .|..|...||:    .:..:|.|:.||::.....|:::..:.:.:
 Frog   624 LLHMPEEQAFCVLVKIMYDYQFRNLYQNNFE----DLHCKFYQLERLLQEQLPDLYSHFVALNLE 684

  Fly   550 NMYFCFRWLLVWYKRELNSEDVLKLWECLWT-RLP-CPNFH-----------LLFSVAILDQET- 600
            ...:..:|.|                 .|:| :.| |..||           ::|.||:...:| 
 Frog   685 AHMYASQWFL-----------------SLFTAKFPLCMVFHIMDLLLSEGLSIIFHVALALLKTS 732

  Fly   601 ----------------RVIIDSQYEFTEILKHVNELSGNIDV-QKTLQVAEGIYLQLKGSETLPN 648
                            ||.:..:|...|..:.:.|.:.||.| .|.|:..|..||.::.|:....
 Frog   733 KEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKFEKEYLAMRESQLQQE 797

  Fly   649 D 649
            |
 Frog   798 D 798

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbc1d15-17NP_001259806.1 DUF3548 37..>191 CDD:192931 37/252 (15%)
TBC 369..598 CDD:214540 52/247 (21%)
rabgap1lNP_001361730.1 PTB_Rab6GAP 123..251 CDD:269922 19/130 (15%)
DUF3694 284..415 CDD:372133 21/151 (14%)
TBC 528..737 CDD:214540 53/256 (21%)
Smc 753..>1011 CDD:224117 13/46 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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