DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tbc1d15-17 and Tbc1d10c

DIOPT Version :9

Sequence 1:NP_001259806.1 Gene:Tbc1d15-17 / 33184 FlyBaseID:FBgn0031233 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_001075449.1 Gene:Tbc1d10c / 361697 RGDID:1311490 Length:446 Species:Rattus norvegicus


Alignment Length:404 Identity:78/404 - (19%)
Similarity:136/404 - (33%) Gaps:127/404 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 ISGDRQTSP----DNYQIIGLSGSTNSACSSNGQSRGGSAE----KSPADSELETLNAQDEKIVN 329
            |||   :||    |.|..||                |.|||    :.|||            :: 
  Rat    28 ISG---SSPYRQADRYGFIG----------------GNSAELGLGQPPAD------------LI- 60

  Fly   330 NLPDRQRVERGHPLTETQWLEFQTPDGRISDSARIKELIF--RGGVVQSLRPEVWKFLLNYYLWS 392
                |||        |.:|:| .|.....:.|.|.|::..  |.|:..:||...|..|...::. 
  Rat    61 ----RQR--------EMKWVE-MTLHWEKTMSRRYKKVKIQCRKGIPSALRARCWPLLCGAHMC- 111

  Fly   393 DTHVERIERRKQKSIEYYNMKA-----QWLAMTTTQEANFCGYRERKCQIEKDVKRTDRSLQFFA 452
                     :|.....|..:..     ||:.                 .|.:|:.|.....:.|.
  Rat   112 ---------QKNNPGTYQELAVAPGDPQWME-----------------TIGRDLHRQFPLHEMFV 150

  Fly   453 GEDNPNLTLLQGILMTYVMYNFDLGYVQGMSDLLAPILEIQVNEVDTFWCFVGFMELVFTNF--- 514
            .........|..:|..|.:|..:.||.|.... :|.:|.:.:...:.|||.|...|:....:   
  Rat   151 SPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGP-VAAVLLMHLPPEEAFWCLVQICEVYLPGYYGP 214

  Fly   515 --DIDQAGMKTQFAQIRRLIEFANAPLFNYMRSHDSDNMYFCFRWLLVWYKRELNSEDVLKLWEC 577
              :..|...:...|.:|||:    ..::.:::......:.:...|.|..:.|.|....||::|:.
  Rat   215 HMEAVQLDAEVFMALLRRLL----PRVYKHLQQVGVGPLLYLPEWFLCLFTRSLPFPIVLRIWDA 275

  Fly   578 LWT-----------------------RLPCPNFHLLFSVAILDQETRVIIDSQYEFTEILKHVNE 619
            ..:                       |..||.  ||.::..|    |.|..:|.:....:..|:.
  Rat   276 FLSEGAKVLFRAGLTLMRLALGTVEQRTACPG--LLETLGAL----RTIPPTQLQEEVFMSQVHN 334

  Fly   620 LS-GNIDVQKTLQV 632
            :: ...|:|:.:::
  Rat   335 VALSERDLQREIRI 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbc1d15-17NP_001259806.1 DUF3548 37..>191 CDD:192931
TBC 369..598 CDD:214540 46/263 (17%)
Tbc1d10cNP_001075449.1 TBC 89..294 CDD:214540 40/236 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.