DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tbc1d15-17 and sgsm1b

DIOPT Version :9

Sequence 1:NP_001259806.1 Gene:Tbc1d15-17 / 33184 FlyBaseID:FBgn0031233 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_003199319.1 Gene:sgsm1b / 100535556 ZFINID:ZDB-GENE-091117-39 Length:1533 Species:Danio rerio


Alignment Length:751 Identity:178/751 - (23%)
Similarity:296/751 - (39%) Gaps:188/751 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDESVRYDRCHQVQLGVFNE---SQLSSVE---EDV---QNLPQ-----QGTGNILFTHDGVLLK 51
            :||..:.:...::.|.| ||   ||.|:.|   |||   |||..     |.||  |..::....:
Zfish   845 VDEDTKSNTEQEIGLKV-NEDSKSQQSAPESTPEDVNISQNLSSESKTGQETG--LKVNEDPKCQ 906

  Fly    52 KASAEHIAD-LNTSGSLSLVEYSRSIAEMPRRRLLLEWQPNDSIMIADDSQDQGDWALVDRISGR 115
            :::.|..:| :.||.|||    |.|..|....      :.:.|...|.:|:.. |......:|..
Zfish   907 QSTPESTSDCMKTSQSLS----SESNMEQKAN------EDSKSQQSAPESKSD-DVKTSQNLSSG 960

  Fly   116 TRTTSE--CRAFNTRPIEPSGGATTRSRVMRAQLEDLSSVEVRHRGQTIRFMRKGANGVHSEFFF 178
            :.|..|  .:.......:||...:| |..|:.. ::|||.....:...::        |:.:...
Zfish   961 SNTKQETSLKVSEDSNCQPSAPEST-SEAMKTS-QNLSSESNTEQETGLK--------VNEDSKC 1015

  Fly   179 QHGNADLFVRSMR-DQHLIENAETSRSGGEVYAILTTENQKLKKTFAELDIGQIKASQ-LPRESW 241
            |....:....:|: .|:|...:.|.:..|    :...|:.|.:.:..|.....:|.|| |..||.
Zfish  1016 QPSAPESTSEAMKTSQNLSSESNTEQETG----LKVNEDSKCQPSAPESTPEHMKTSQNLSSESN 1076

  Fly   242 LPNKLAGILGNIPDYVQPPFQRSPKSRP-------------------GVLISGDRQTSPDNYQII 287
            ...: .|:..|.....:   |.:|||.|                   |:.::.|.:..|...:..
Zfish  1077 TEQE-TGLKVNKDSKSE---QSAPKSTPEHMKTCLNLSSELNMEQATGLKVNKDSKCQPSAPEST 1137

  Fly   288 GLSGSTNSACSSNGQ----------------SRGGSAEKSPADSE------LETLNAQDEKIVNN 330
            .....|:...||..|                :|..|..|...:||      |.:|:.....:.::
Zfish  1138 LDDMKTSQNLSSGPQNVPQTAPQTISWDSEHNRARSIIKQMTESESESCGPLTSLSKPSPDMSDD 1202

  Fly   331 LPDRQRVER---------------GHPLTETQ-----------------WLEF-------QTPDG 356
            .|....:|.               ..|||..:                 .||.       .||:|
Zfish  1203 SPSALEMEEIPSSVVYMSSESSMCRTPLTLARPVAPCIAAGEKSPMGMPALELCMEPGVNTTPEG 1267

  Fly   357 RISDSARIKELIFRGGVVQSLRPEVWKFLLNYYLWSDTHVERIERR-------------KQKSIE 408
              :|||..:|           .||    :.|.:...|:.....::.             .|:.::
Zfish  1268 --TDSALSEE-----------EPE----MDNLFPKPDSLAVTGDKNDIASPVSSIGTTYSQELVD 1315

  Fly   409 YYNMKAQWLAMTTTQEANFCGYRERKCQIEKDVKRTDRSLQFFAGEDNPNLTLLQGILMTYVMYN 473
            .|.:...                    :|:|||:|.||:..:|.   ..||..|:.|:.:||..:
Zfish  1316 LYTLNLH--------------------RIDKDVQRCDRNYWYFT---PANLEKLRNIMCSYVWQH 1357

  Fly   474 FDLGYVQGMSDLLAPILEIQVNEVDTFWCFVGFMELVFTNFDIDQAGMKTQFAQIRRLIEFANAP 538
            .|:||||||.|||||:|.|..:|...|.||...|:.:..||....| |.|.||.:|.||:..::.
Zfish  1358 LDIGYVQGMCDLLAPLLVILDDEAMAFSCFTELMKRMNQNFPHGGA-MDTHFANMRSLIQILDSE 1421

  Fly   539 LFNYMRSH-DSDNMYFCFRWLLVWYKRELNSEDVLKLWECLWTR--LPCPNFHLLFSVAILDQET 600
            ||..|:.: |..:.|||:||.|:.:|||:..:||..:||.:|..  ....:|.|..::|:::...
Zfish  1422 LFELMQQNGDYTHFYFCYRWFLLDFKREMVYDDVFSVWETIWAARYASSEHFVLFIALALVELYR 1486

  Fly   601 RVIIDSQYEFTEILKHVNELSGNIDVQKTLQVAEGI 636
            .:|:::..:||:|:|..||::...||.|.|.:|..:
Zfish  1487 DIILENNMDFTDIIKFFNEMAERHDVPKLLVMARDL 1522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbc1d15-17NP_001259806.1 DUF3548 37..>191 CDD:192931 30/156 (19%)
TBC 369..598 CDD:214540 70/244 (29%)
sgsm1bXP_003199319.1 RUN 40..184 CDD:280855
PH_RUTBC 249..418 CDD:275431
Ehrlichia_rpt 652..1218 CDD:118064 84/404 (21%)
TBC <1321..1490 CDD:214540 64/192 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.