DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tbc1d15-17 and sgsm1a

DIOPT Version :9

Sequence 1:NP_001259806.1 Gene:Tbc1d15-17 / 33184 FlyBaseID:FBgn0031233 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_009299656.1 Gene:sgsm1a / 100270734 ZFINID:ZDB-GENE-060526-379 Length:1392 Species:Danio rerio


Alignment Length:536 Identity:138/536 - (25%)
Similarity:222/536 - (41%) Gaps:110/536 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 DLFVRSMRDQHLIENAETSRSGGEVYAILTTENQKLKKTFAELDIGQIKASQL----PRESWL-- 242
            |.||.|..|...:...|.   |..:...||:||..|.: ..|.||.  ||:::    |.|..:  
Zfish   883 DAFVASTADHSQVTKMEV---GESLERSLTSENDALTR-HTEPDIP--KATEVMESTPPERKMNE 941

  Fly   243 ---------PNKLAGILGNIPDYVQPPFQRSPKSRPG----------VLISGD--------RQTS 280
                     |:|  ||........||...:..|....          |.:|.|        .:||
Zfish   942 TRVRADIERPHK--GIKDITAIREQPLIAKDLKVSDALEQKVVADIQVSVSEDTEKEATKTNETS 1004

  Fly   281 PDNYQIIGLSGSTN---------------SACSSNGQSRGGSAEKSPADSELETL---------- 320
            .||.....:....|               ......|:.:.....|:|...|...|          
Zfish  1005 KDNDSKTWMDEENNVRVLKPIDEKTSDLADEAGPTGKRKADMQRKAPVVEETVPLVHEAFSNRKM 1069

  Fly   321 -NAQDEKIVNNLPDRQRVERGHPLTETQWLEFQTPDGRISDSARIKELIFR-----GGV------ 373
             .||||...:..|  ..:|.....|...|....:|..|.::.|.|..|..|     |.:      
Zfish  1070 SEAQDETESDESP--SAIEMEEIPTAKVWERKSSPKRRTTEQATIPALELRLEEAHGKLSSEEVN 1132

  Fly   374 -----VQSLRPEVWKFLLNYYLWSDTHVERIERRKQKSIEYYNMKAQWLAMTTTQEANFCGYRER 433
                 ::||.|::....:|        .|:||.....|.         :..|.:||. ...|...
Zfish  1133 PEKPEMESLCPQLDSLAVN--------TEKIEASSPVSS---------IGTTYSQEL-LDMYTLN 1179

  Fly   434 KCQIEKDVKRTDRSLQFFAGEDNPNLTLLQGILMTYVMYNFDLGYVQGMSDLLAPILEIQVNEVD 498
            ..:|:|||:|.||:..:|.   ..||..|:.|:.:||..:.::||||||.|||||:|.|..:|..
Zfish  1180 LHRIDKDVQRCDRNYWYFT---PANLEKLRNIMCSYVWQHLEIGYVQGMCDLLAPLLVILDDEAM 1241

  Fly   499 TFWCFVGFMELVFTNFDIDQAGMKTQFAQIRRLIEFANAPLFNYMRSH-DSDNMYFCFRWLLVWY 562
            .|.||...|:.:..||....| |.|.||.:|.||:..:|.||..|..: |..:.|||:||.|:.:
Zfish  1242 AFSCFTELMKRMNQNFPHGGA-MDTHFANMRSLIQILDAELFELMHQNGDYTHFYFCYRWFLLDF 1305

  Fly   563 KRELNSEDVLKLWECLWTR--LPCPNFHLLFSVAILDQETRVIIDSQYEFTEILKHVNELSGNID 625
            ||||..:||..:||.:|..  :...:|.|..::::::....:|:::..:||:|:|..||::.:.:
Zfish  1306 KRELVYDDVFAVWETIWAAKCVSSSHFVLFIALSLVEIYRDIILENNMDFTDIIKFFNEMAEHHN 1370

  Fly   626 VQKTLQVAEGIYLQLK 641
            :::.|.::..:..:::
Zfish  1371 IKQILTLSRDLVCKVQ 1386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbc1d15-17NP_001259806.1 DUF3548 37..>191 CDD:192931 4/6 (67%)
TBC 369..598 CDD:214540 78/247 (32%)
sgsm1aXP_009299656.1 RUN 44..188 CDD:280855
PH_RUTBC 256..425 CDD:275431
TBC 1168..1349 CDD:214540 67/185 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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