DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tbc1d15-17 and sgsm3

DIOPT Version :9

Sequence 1:NP_001259806.1 Gene:Tbc1d15-17 / 33184 FlyBaseID:FBgn0031233 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_001123837.1 Gene:sgsm3 / 100170594 XenbaseID:XB-GENE-965522 Length:753 Species:Xenopus tropicalis


Alignment Length:422 Identity:92/422 - (21%)
Similarity:161/422 - (38%) Gaps:85/422 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 GHPLTE-----TQW---LEFQTPDGRISD------------SARIKELIFRGGVVQSLRPEVWKF 384
            |.||||     .:|   ||| |.:..:.|            |.:::.|:. .|:..|:||::|..
 Frog    65 GIPLTEDPQQRLRWQAHLEF-THNHDVGDLTWDKIDVTLPHSDKLRSLVL-AGIPHSMRPQLWMR 127

  Fly   385 LLNYYLWSDTHVERIERRKQKSIEYYNMKAQWLAMTTTQEANFCGYRERKCQIEKDVKRTDRSLQ 449
            |....           ::||.|...|....:..:...|..|.         |||||:.||..|..
 Frog   128 LSGAL-----------QKKQNSEMTYKDIVRNSSNDDTLAAK---------QIEKDLLRTMPSNA 172

  Fly   450 FFAGEDNPNLTLLQGILMTYVMYNFDLGYVQGMSDLLAPILEIQVNEVDTFWCFVGFME--LVFT 512
            .|:...:..:..|:.:|........|:||.|| :.::|..|.:.:.|.|.||.....:|  :..:
 Frog   173 CFSNLQSVGVPRLRRVLRGLAWLYPDIGYCQG-TGMVAACLLLFLEEEDAFWMMAAIVEDLVPVS 236

  Fly   513 NFDIDQAGMKTQFAQIRRLIEFANAPLFNYMRSHDSDNMYFCFRWLLVWYKRELNSEDVLKLWEC 577
            .|:....|::|....:|.||......|...::.||.:.......|.|..:...::.:.:|::|:.
 Frog   237 YFNTTLVGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVHIKLLLRIWDF 301

  Fly   578 LWTRLPCPNFHLLFSVAILDQE-------------TRVIIDSQYEFTEI-LKHVNELSGN----- 623
            .:.:.....|.....:..:.:|             |...|.||.|..:: |:....:||.     
 Frog   302 FFYQGSLVLFQTTLGMLKMKEEELIQSENSASIFNTLSDIPSQIEEADVLLREAMLISGTLTEVM 366

  Fly   624 IDVQKTLQVAEGIYL-----QLKGSETLPNDIRSIIGEPLLPAAAGEEIDGGMVDEEPTYSDDGF 683
            |:.|:...:|   ||     ||..|.....::..||      ....:....|:.  ...:.||.|
 Frog   367 IEAQRRKHLA---YLIADQGQLLNSTAAVTNLSKII------RRQSQRRKSGIT--TLLFGDDDF 420

  Fly   684 DELVKELTPEEKVRQQALLEEACERSLFLQFH 715
            :.|     ..:.::|.||:.:..|..|.:..|
 Frog   421 EAL-----KSKNIKQTALVADLREAILQVARH 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbc1d15-17NP_001259806.1 DUF3548 37..>191 CDD:192931
TBC 369..598 CDD:214540 49/230 (21%)
sgsm3NP_001123837.1 TBC 115..326 CDD:214540 50/231 (22%)
SH3_SGSM3 486..538 CDD:212747
RUN 565..716 CDD:367169
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.