DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11617 and RPL

DIOPT Version :10

Sequence 1:NP_608502.1 Gene:CG11617 / 33183 FlyBaseID:FBgn0031232 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_195823.1 Gene:RPL / 831745 AraportID:AT5G02030 Length:575 Species:Arabidopsis thaliana


Alignment Length:195 Identity:47/195 - (24%)
Similarity:71/195 - (36%) Gaps:48/195 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 HSRRAWPPEEELHPASRATKRLFTPDIKRMLKDWLIRRRENPYPSREEKKQLAAETGLTYTQICN 77
            |....|.|...| |....|          :|:.||.....:|||:..:|..||.:|||:..|:.|
plant   344 HHAPVWRPHRGL-PERAVT----------VLRAWLFDHFLHPYPTDTDKLMLAKQTGLSRNQVSN 397

  Fly    78 WFANWRRKLKNSEREKAKKSWGHLIKNYNHNARGNVEQFSISSEDSIWEEEMHSCPAEDDEGDDN 142
            ||.|.|.::           |..:::.. |.......|.|.||.   |.:|..|.....|..::|
plant   398 WFINARVRV-----------WKPMVEEI-HMLETRQSQRSSSSS---WRDERTSTTVFPDNSNNN 447

  Fly   143 EEFSS-------------------HSTGSDGNANNEPSSPYKPILF---VGSAGLTERISAQTGG 185
            ...||                   |.|.::.:..|..|.....:.|   :||:.:....|:..||
plant   448 PSSSSAQQRPNNSSPPRRARNDDVHGTNNNNSYVNSGSGGGSAVGFSYGIGSSNVPVMNSSTNGG 512

  Fly   186  185
            plant   513  512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11617NP_608502.1 homeodomain 29..90 CDD:238039 19/60 (32%)
RPLNP_195823.1 POX 165..292 CDD:214728
Homeobox_KN 367..405 CDD:428673 16/37 (43%)
Blue background indicates that the domain is not in the aligned region.

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