DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11617 and Lhx3

DIOPT Version :10

Sequence 1:NP_608502.1 Gene:CG11617 / 33183 FlyBaseID:FBgn0031232 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_001034742.1 Gene:Lhx3 / 16871 MGIID:102673 Length:402 Species:Mus musculus


Alignment Length:180 Identity:48/180 - (26%)
Similarity:77/180 - (42%) Gaps:41/180 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ASRATKRLFTPDIKRMLKDWLIRRRENPYPSREEKKQLAAETGLTYTQICNWFANWRRKLKNSER 91
            |....||..|....:.|:........:|.|:|..::||::||||....:..||.|.|.|.|..::
Mouse   158 AEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 222

  Fly    92 EKAKKSWGHLIKNYNHNARGNVEQFSISSEDSIWEEEMHSCPAEDDEGDDNE---EFSSHSTGSD 153
            :..::.||...:|.. .:||:    |.|.:|||            .||.|::   .|:...:.:|
Mouse   223 DAGRQRWGQYFRNMK-RSRGS----SKSDKDSI------------QEGQDSDAEVSFTDEPSMAD 270

  Fly   154 -GNAN------NEPSSPY-KPILFVGS-----AGLTERISAQTGGKTKYK 190
             |.||      .||:... :|:..:||     .|||        |..:|:
Mouse   271 MGPANGLYSSLGEPAPALGRPVGGLGSFTLDHGGLT--------GPEQYR 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11617NP_608502.1 homeodomain 29..90 CDD:238039 19/60 (32%)
Lhx3NP_001034742.1 LIM1_Lhx3b 33..87 CDD:188851
LIM2_Lhx3_Lhx4 95..150 CDD:188762
Homeodomain 163..219 CDD:459649 18/55 (33%)
Blue background indicates that the domain is not in the aligned region.

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