Protein Alignment CG3436 and snrnp40

DIOPT Version :10

• Sequence 1: NP_608501.1
• Gene: CG3436 / 33180
• FlyBaseID: FBgn0031229
• Length: 347
• Species: Drosophila melanogaster
• Sequence 2: NP_001025544.1
• Gene: snrnp40 / 594941
• XenbaseID: XB-GENE-957415
• Length: 337
• Species: Xenopus tropicalis
• Alignment Length: 342
• Identity: 197/342 - (57%)
• Similarity: 257/342 - (75%)
• Gaps: 11/342 - (3%)

  Fly     4 KRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEIFTAEFHPEGE 68
            ||....::..| ||:.:|:|:.          ||..|:|:||||||.|.|||||::..:|||.|.
 Frog     6 KRKGMELVPVQ-AKKPRNELVV----------SGPPRSSSLQAPIMLLSGHEGEVYCCKFHPNGV 59

  Fly    69 LLLSSGFDRQIYIWQVYEDCENVMAMSGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQ 133
            .|.|:||||.|.:|.||.||:|...:.||||||||.|:..|||.:|:.|||||:|.||..||:|.
 Frog    60 TLSSAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSLLFSASTDKTVAIWDCETGERV 124

  Fly   134 RRFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVI 198
            :|.|||.:||||...:|||.||:|:||||.|:|:||.|||.|..|.::.:||.:|.|.||.:|:|
 Frog   125 KRLKGHTSFVNSCYPARRGPQLICTGSDDGTVKLWDFRKKAAVQTFQNTYQVLSVTFNDTSDQII 189

  Fly   199 SGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRVWDVRPYAPGERCV 263
            ||||||::|:||:|:..:::.:|||.|::||:|||.||.::|:||||||:|||||||:||.||||
 Frog   190 SGGIDNDIKVWDLRQNKLMYTMRGHGDSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCV 254

  Fly   264 KVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYIWDVNTRRILYKLPGHNGSVNAVDFSPKE 328
            |:|||:.||||||||||:||....||.:|||||.||:||..:||||||||||.||||.|.|.|:|
 Frog   255 KIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPEE 319

  Fly   329 PLILSGSSDKTLYLGEI 345
            |:|||.:|||.||:|||
 Frog   320 PIILSAASDKRLYMGEI 336

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3436	NP_608501.1	WD40	<46..342	CDD:441893	180/295 (61%)
		WD40 repeat	58..96	CDD:293791	17/37 (46%)
		WD40 repeat	102..138	CDD:293791	19/35 (54%)
		WD40 repeat	143..180	CDD:293791	22/36 (61%)
		WD40 repeat	186..221	CDD:293791	16/34 (47%)
		WD40 repeat	227..267	CDD:293791	28/39 (72%)
		WD40 repeat	277..313	CDD:293791	23/35 (66%)
		WD40 repeat	319..342	CDD:293791	14/22 (64%)
snrnp40	NP_001025544.1	WD40	<37..331	CDD:441893	179/293 (61%)
		WD40 repeat	50..87	CDD:293791	17/36 (47%)
		WD40 repeat	92..128	CDD:293791	20/35 (57%)
		WD40 repeat	135..170	CDD:293791	20/34 (59%)
		WD40 repeat	176..212	CDD:293791	17/35 (49%)
		WD40 repeat	218..258	CDD:293791	28/39 (72%)
		WD40 repeat	268..292	CDD:293791	15/23 (65%)
		WD40 repeat	310..332	CDD:293791	13/21 (62%)