DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3436 and Poc1

DIOPT Version :9

Sequence 1:NP_001285543.1 Gene:CG3436 / 33180 FlyBaseID:FBgn0031229 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001261799.1 Gene:Poc1 / 39502 FlyBaseID:FBgn0036354 Length:403 Species:Drosophila melanogaster


Alignment Length:258 Identity:77/258 - (29%)
Similarity:125/258 - (48%) Gaps:18/258 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 SGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSG 159
            :||||.:.:..|.|||:.|.|.|||.|:..|::....|..||..|...||.|..|.:| .|:.|.
  Fly    15 TGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKG-NLVASA 78

  Fly   160 SDDRTIKIWDARKK-----HAAHTLESPFQVTAVCFGDTGEQVISGGIDNEVKIWDIRKQAVLHH 219
            ..|||:|||:.:.:     ..||:.    .|.:|.|..||..:::...|...|||.:.::..:..
  Fly    79 GHDRTVKIWEPKLRGVSGEFVAHSK----AVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSS 139

  Fly   220 LRGHSDTITGMSLSPEGDFILTNAMDNTLRVWDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSP 284
            ....::.:.....||.|..:.|.:.|.::|::||   ..|| ||:.|. .:....:.|   ||.|
  Fly   140 FAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDV---DSGE-CVRTFT-EERAAPRQL---AWHP 196

  Fly   285 GSDKITSGSADRHVYIWDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDE 347
            ..:.:........:.|:||:..::|.....|:..||.|.|.|....:||||.|:|:.:.::.|
  Fly   197 WGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLE 259

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG3436NP_001285543.1 WD40 <19..346 CDD:225201 76/255 (30%)
WD40 50..342 CDD:238121 76/251 (30%)