DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3436 and snrnp40

DIOPT Version :9

Sequence 1:NP_001285543.1 Gene:CG3436 / 33180 FlyBaseID:FBgn0031229 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_956616.1 Gene:snrnp40 / 393292 ZFINID:ZDB-GENE-040426-978 Length:347 Species:Danio rerio


Alignment Length:345 Identity:192/345 - (55%)
Similarity:256/345 - (74%) Gaps:14/345 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEIFTAEFHP 65
            :|.|||...::.|.::::              |...|..|:|:||||||.|.|||||::..:|||
Zfish    16 VGVKRPRTELVAAAQSQQ--------------LSAMGPPRSSSLQAPIMLLSGHEGEVYCCKFHP 66

  Fly    66 EGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGAVMEAHFTPDGSHIFTCSTDKTLAFWDIATG 130
            .|..|.|||:||.|.:|.||.||||...:.||||||||.|:..|||.:|:.|||||:..||..||
Zfish    67 NGATLASSGYDRLILMWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTDKTVCVWDSETG 131

  Fly   131 QRQRRFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGE 195
            :|.:|.|||.:||||...:|||.||.|:||||.|:|:||.|||.:.||.::.:||.:|.|.||.:
Zfish   132 ERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTFQNTYQVLSVTFNDTSD 196

  Fly   196 QVISGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRVWDVRPYAPGE 260
            |:|||||||::|:||:|:..:::.::||.|::||:|||.:|.::|:|:|||::||||:||:||.|
Zfish   197 QIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYLLSNSMDNSVRVWDIRPFAPKE 261

  Fly   261 RCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYIWDVNTRRILYKLPGHNGSVNAVDFS 325
            ||||:|||:.||||||||||:||....||.:|||||.|||||..||||:||||||.||||.|.|.
Zfish   262 RCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYIWDTTTRRIVYKLPGHAGSVNEVAFH 326

  Fly   326 PKEPLILSGSSDKTLYLGEI 345
            |:||::|||||||.||:|||
Zfish   327 PEEPIVLSGSSDKRLYIGEI 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3436NP_001285543.1 WD40 <19..346 CDD:225201 187/327 (57%)
WD40 50..342 CDD:238121 173/291 (59%)
WD40 repeat 58..96 CDD:293791 18/37 (49%)
WD40 repeat 102..138 CDD:293791 18/35 (51%)
WD40 repeat 143..180 CDD:293791 22/36 (61%)
WD40 repeat 186..221 CDD:293791 16/34 (47%)
WD40 repeat 227..267 CDD:293791 24/39 (62%)
WD40 repeat 277..313 CDD:293791 24/35 (69%)
WD40 repeat 319..342 CDD:293791 15/22 (68%)
snrnp40NP_956616.1 WD40 <48..347 CDD:225201 180/299 (60%)
WD40 52..343 CDD:238121 173/290 (60%)
WD40 repeat 59..97 CDD:293791 18/37 (49%)
WD40 repeat 103..139 CDD:293791 18/35 (51%)
WD40 repeat 144..181 CDD:293791 22/36 (61%)
WD40 repeat 187..222 CDD:293791 16/34 (47%)
WD40 repeat 228..268 CDD:293791 24/39 (62%)
WD40 repeat 278..314 CDD:293791 24/35 (69%)
WD40 repeat 320..343 CDD:293791 15/22 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575844
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0265
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3538
Inparanoid 1 1.050 427 1.000 Inparanoid score I1723
OMA 1 1.010 - - QHG54559
OrthoDB 1 1.010 - - D1133270at2759
OrthoFinder 1 1.000 - - FOG0004893
OrthoInspector 1 1.000 - - oto38803
orthoMCL 1 0.900 - - OOG6_102288
Panther 1 1.100 - - LDO PTHR44006
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R273
SonicParanoid 1 1.000 - - X3449
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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