DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3436 and Wdr62

DIOPT Version :10

Sequence 1:NP_608501.1 Gene:CG3436 / 33180 FlyBaseID:FBgn0031229 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001259886.1 Gene:Wdr62 / 33367 FlyBaseID:FBgn0031374 Length:2397 Species:Drosophila melanogaster


Alignment Length:269 Identity:61/269 - (22%)
Similarity:107/269 - (39%) Gaps:73/269 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 LEGHEGEIFTAEFHP---EGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGAVMEAHFTPDGSH 112
            :|.||.|:...|:..   |.:||.|:..||.|:::.|.::...:..:..||.::....|...|.:
  Fly   538 IEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLLQTLDDHSSSITSIKFVGAGLN 602

  Fly   113 --IFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKHA 175
              :.:|..||::.|         |.|:|: .|:.....|  |:..|.    |..:   |:..|| 
  Fly   603 FQMISCGADKSIMF---------RSFQGN-IFMRGTNTS--GKTTLY----DMEV---DSNAKH- 647

  Fly   176 AHTLESPFQVTAVCFGDTGEQVISGGIDNEVKIWDIRKQAVLHHLRG-HSD--TITGMSLSPEGD 237
                                 :::...|..|:::..:........:| |||  ::..:||.|.|.
  Fly   648 ---------------------ILTACQDRNVRVYGTQNAKQTKTFKGSHSDEGSLIKLSLDPSGI 691

  Fly   238 FILTNAMDNTLRVWDVRPYAPGERCVKVFQGHQH--------NFEKNLLRCAWSPGSDKITSGSA 294
            ::.|:..|.||.|:|   |...| |:....||..        |..::|:            |.|.
  Fly   692 YVATSCTDKTLAVYD---YYSNE-CMARMYGHSELVTGLKFTNDCRHLI------------SASG 740

  Fly   295 DRHVYIWDV 303
            |..::||.|
  Fly   741 DGCIFIWQV 749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3436NP_608501.1 WD40 <46..342 CDD:441893 61/269 (23%)
WD40 repeat 58..96 CDD:293791 9/40 (23%)
WD40 repeat 102..138 CDD:293791 8/37 (22%)
WD40 repeat 143..180 CDD:293791 7/36 (19%)
WD40 repeat 186..221 CDD:293791 2/34 (6%)
WD40 repeat 227..267 CDD:293791 13/39 (33%)
WD40 repeat 277..313 CDD:293791 7/27 (26%)
WD40 repeat 319..342 CDD:293791
Wdr62NP_001259886.1 WD40 <73..236 CDD:441893
WD40 repeat 73..107 CDD:293791
WD40 repeat 113..161 CDD:293791
WD40 156..573 CDD:475233 12/34 (35%)
WD40 repeat 167..207 CDD:293791
WD40 repeat 209..285 CDD:293791
WD40 repeat 303..338 CDD:293791
WD40 repeat 353..407 CDD:293791
WD40 <437..750 CDD:441893 61/269 (23%)
WD40 repeat 505..540 CDD:293791 0/1 (0%)
WD40 repeat 546..586 CDD:293791 9/39 (23%)
WD40 repeat 591..631 CDD:293791 10/49 (20%)
WD40 repeat 637..672 CDD:293791 6/63 (10%)
WD40 repeat 679..717 CDD:293791 13/41 (32%)
WD40 repeat 723..749 CDD:293791 7/37 (19%)
Blue background indicates that the domain is not in the aligned region.

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