DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3436 and Snrnp40

DIOPT Version :9

Sequence 1:NP_001285543.1 Gene:CG3436 / 33180 FlyBaseID:FBgn0031229 Length:347 Species:Drosophila melanogaster
Sequence 2:NP_001128028.1 Gene:Snrnp40 / 313056 RGDID:1309198 Length:358 Species:Rattus norvegicus


Alignment Length:352 Identity:200/352 - (56%)
Similarity:257/352 - (73%) Gaps:22/352 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KRPNNSVILA----------QEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQLEGHEGEI 58
            |||.:.::|.          |:|...            |||::|..|.|:||||||.|.|||||:
  Rat    18 KRPRHELLLGAAGSGPGAGQQQATPG------------ALLQTGPPRCSSLQAPIMLLSGHEGEV 70

  Fly    59 FTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGAVMEAHFTPDGSHIFTCSTDKTLA 123
            :..:|||.|..|.|:||||.|.:|.||.||:|...:.||||||||.|:..|||.:|:.|||||:|
  Rat    71 YCCKFHPNGSTLASAGFDRLILLWSVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVA 135

  Fly   124 FWDIATGQRQRRFKGHGNFVNSVQGSRRGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAV 188
            .||..||:|.:|.|||.:||||...:|||.||:|:||||.|:|:||.|||.|..|.::.:||.||
  Rat   136 VWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAV 200

  Fly   189 CFGDTGEQVISGGIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRVWDV 253
            .|.||.:|:|||||||::|:||:|:..:.:.:|||:|::||:|||.||.::|:||||||:|||||
  Rat   201 TFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265

  Fly   254 RPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYIWDVNTRRILYKLPGHNGS 318
            ||:||.|||||:|||:.||||||||||:|||...||.:|||||.||:||..:||||||||||.||
  Rat   266 RPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGS 330

  Fly   319 VNAVDFSPKEPLILSGSSDKTLYLGEI 345
            :|.|.|.|.||:|||.||||.||:|||
  Rat   331 INEVAFHPDEPIILSASSDKRLYMGEI 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3436NP_001285543.1 WD40 <19..346 CDD:225201 194/327 (59%)
WD40 50..342 CDD:238121 178/291 (61%)
WD40 repeat 58..96 CDD:293791 17/37 (46%)
WD40 repeat 102..138 CDD:293791 19/35 (54%)
WD40 repeat 143..180 CDD:293791 22/36 (61%)
WD40 repeat 186..221 CDD:293791 17/34 (50%)
WD40 repeat 227..267 CDD:293791 28/39 (72%)
WD40 repeat 277..313 CDD:293791 24/35 (69%)
WD40 repeat 319..342 CDD:293791 14/22 (64%)
Snrnp40NP_001128028.1 WD40 63..352 CDD:238121 177/288 (61%)
WD40 repeat 71..108 CDD:293791 17/36 (47%)
WD40 repeat 113..149 CDD:293791 20/35 (57%)
WD40 repeat 156..191 CDD:293791 20/34 (59%)
WD40 repeat 197..233 CDD:293791 18/35 (51%)
WD40 repeat 239..279 CDD:293791 28/39 (72%)
WD40 repeat 289..313 CDD:293791 16/23 (70%)
WD40 repeat 331..353 CDD:293791 13/21 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166336705
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0265
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3538
Inparanoid 1 1.050 433 1.000 Inparanoid score I1655
OMA 1 1.010 - - QHG54559
OrthoDB 1 1.010 - - D1133270at2759
OrthoFinder 1 1.000 - - FOG0004893
OrthoInspector 1 1.000 - - oto98663
orthoMCL 1 0.900 - - OOG6_102288
Panther 1 1.100 - - LDO PTHR44006
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3449
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

Return to query results.
Submit another query.