DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and CSTF64

DIOPT Version :9

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_177325.2 Gene:CSTF64 / 843510 AraportID:AT1G71800 Length:461 Species:Arabidopsis thaliana


Alignment Length:103 Identity:28/103 - (27%)
Similarity:46/103 - (44%) Gaps:21/103 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 EQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTD-NNGRPRNFGFVTYQRLCAVPFALDLYQ 131
            ::|.:|.||:....|||.|.|:..:.||:...|:.|| ..|:|:.:||..|:   ....||...:
plant     7 QRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYK---DEETALSARR 68

  Fly   132 GLELFQ-----------------KKVTIKQQGGKQLPA 152
            .|:.::                 .|...:.|||..||:
plant    69 NLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPS 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:240782 23/91 (25%)
RRM <70..210 CDD:223796 28/101 (28%)
CSTF64NP_177325.2 PABP-1234 <11..318 CDD:130689 27/99 (27%)
RRM_CSTF2_CSTF2T 11..85 CDD:241115 21/76 (28%)
CSTF2_hinge 160..228 CDD:373015
PAT1 <222..>433 CDD:370676
CSTF_C 419..454 CDD:373006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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