DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and UBP1A

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_849806.1 Gene:UBP1A / 841846 AraportID:AT1G54080 Length:430 Species:Arabidopsis thaliana


Alignment Length:188 Identity:49/188 - (26%)
Similarity:71/188 - (37%) Gaps:52/188 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 NGDQLVG-QLEDDDDEEEDEEQRTLFCGNLDERVTEEILYEVF--LQAGPIEGVRIPTDNNGRPR 110
            ||....| :|.::|..|.:.:..|::.|||...||:..|:.:|  |.||.||.||:..|     :
plant   251 NGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----K 310

  Fly   111 NFGFVTY----------QRLCAVPFALDLYQGLELFQKKVTIKQQGGKQLPAYNQSRLRNQFMME 165
            .||||.|          |...|.||         ||.:::.. ..|.|..|:...|        .
plant   311 GFGFVRYNTHDEAALAIQMGNAQPF---------LFSRQIRC-SWGNKPTPSGTAS--------N 357

  Fly   166 ALPQPSPLRHARHSLHNGKPYDRNPFGHNADQRRRSDSSVMERNRLKPQQHHQHMQGG 223
            .||.|:|......|..:...|:|.                :...::.||..|...|.|
plant   358 PLPPPAPASVPSLSAMDLLAYERQ----------------LALAKMHPQAQHSLRQAG 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 27/85 (32%)
UBP1ANP_849806.1 RRM1_PUB1 65..135 CDD:410026
RRM2_PUB1 147..230 CDD:410031
RRM_SF 273..349 CDD:473069 28/90 (31%)
Blue background indicates that the domain is not in the aligned region.

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