DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11454 and ATRBP45C

DIOPT Version :10

Sequence 1:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_567764.1 Gene:ATRBP45C / 828808 AraportID:AT4G27000 Length:415 Species:Arabidopsis thaliana


Alignment Length:134 Identity:39/134 - (29%)
Similarity:57/134 - (42%) Gaps:28/134 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 EEDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTY-QRLCAVPFAL 127
            |.|....|:|.|.:|:.|||:.|..||.|.|.:..|:||..     :..|||.| .|.||.. ||
plant   272 ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-----KRCGFVQYANRACAEQ-AL 330

  Fly   128 DLYQGLELFQKKVTIKQQGGKQLP-AYNQSRLRNQFMMEALPQPSPLRHARHSLHNGKPYDRNPF 191
            .:..|.:|          ||:.:. ::.:|....|      .||...::.....:.|.|    |.
plant   331 SVLNGTQL----------GGQSIRLSWGRSPSNKQ------TQPDQAQYGGGGGYYGYP----PQ 375

  Fly   192 GHNA 195
            |:.|
plant   376 GYEA 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 26/74 (35%)
ATRBP45CNP_567764.1 RRM1_SECp43_like 81..158 CDD:409780
RRM2_SECp43_like 172..251 CDD:409781
RRM_SF 277..348 CDD:473069 28/86 (33%)
Blue background indicates that the domain is not in the aligned region.

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